Literature DB >> 18262675

The impact of next-generation sequencing technology on genetics.

Elaine R Mardis1.   

Abstract

If one accepts that the fundamental pursuit of genetics is to determine the genotypes that explain phenotypes, the meteoric increase of DNA sequence information applied toward that pursuit has nowhere to go but up. The recent introduction of instruments capable of producing millions of DNA sequence reads in a single run is rapidly changing the landscape of genetics, providing the ability to answer questions with heretofore unimaginable speed. These technologies will provide an inexpensive, genome-wide sequence readout as an endpoint to applications ranging from chromatin immunoprecipitation, mutation mapping and polymorphism discovery to noncoding RNA discovery. Here I survey next-generation sequencing technologies and consider how they can provide a more complete picture of how the genome shapes the organism.

Mesh:

Year:  2008        PMID: 18262675     DOI: 10.1016/j.tig.2007.12.007

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  674 in total

Review 1.  Understanding the genetics of coronary artery disease through the lens of noninvasive imaging.

Authors:  Eunice Yang; Jose D Vargas; David A Bluemke
Journal:  Expert Rev Cardiovasc Ther       Date:  2012-01

Review 2.  A guided tour of large genome size in animals: what we know and where we are heading.

Authors:  France Dufresne; Nicholas Jeffery
Journal:  Chromosome Res       Date:  2011-10       Impact factor: 5.239

3.  Label-free electrical detection of pyrophosphate generated from DNA polymerase reactions on field-effect devices.

Authors:  Grace M Credo; Xing Su; Kai Wu; Oguz H Elibol; David J Liu; Bobby Reddy; Ta-Wei Tsai; Brian R Dorvel; Jonathan S Daniels; Rashid Bashir; Madoo Varma
Journal:  Analyst       Date:  2012-01-19       Impact factor: 4.616

4.  Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA.

Authors:  Rachel Marine; Shawn W Polson; Jacques Ravel; Graham Hatfull; Daniel Russell; Matthew Sullivan; Fraz Syed; Michael Dumas; K Eric Wommack
Journal:  Appl Environ Microbiol       Date:  2011-09-23       Impact factor: 4.792

5.  Assessing the impact of non-differential genotyping errors on rare variant tests of association.

Authors:  Scott Powers; Shyam Gopalakrishnan; Nathan Tintle
Journal:  Hum Hered       Date:  2011-10-15       Impact factor: 0.444

6.  Normal and compound poisson approximations for pattern occurrences in NGS reads.

Authors:  Zhiyuan Zhai; Gesine Reinert; Kai Song; Michael S Waterman; Yihui Luan; Fengzhu Sun
Journal:  J Comput Biol       Date:  2012-06       Impact factor: 1.479

7.  Seasonal diversity of planktonic protists in Southwestern Alberta rivers over a 1-year period as revealed by terminal restriction fragment length polymorphism and 18S rRNA gene library analyses.

Authors:  Matthew C Thomas; L Brent Selinger; G Douglas Inglis
Journal:  Appl Environ Microbiol       Date:  2012-06-08       Impact factor: 4.792

Review 8.  Viral quasispecies evolution.

Authors:  Esteban Domingo; Julie Sheldon; Celia Perales
Journal:  Microbiol Mol Biol Rev       Date:  2012-06       Impact factor: 11.056

9.  Toward single-molecule optical mapping of the epigenome.

Authors:  Michal Levy-Sakin; Assaf Grunwald; Soohong Kim; Natalie R Gassman; Anna Gottfried; Josh Antelman; Younggyu Kim; Sam O Ho; Robin Samuel; Xavier Michalet; Ron R Lin; Thomas Dertinger; Andrew S Kim; Sangyoon Chung; Ryan A Colyer; Elmar Weinhold; Shimon Weiss; Yuval Ebenstein
Journal:  ACS Nano       Date:  2013-12-20       Impact factor: 15.881

10.  Realistic artificial DNA sequences as negative controls for computational genomics.

Authors:  Juan Caballero; Arian F A Smit; Leroy Hood; Gustavo Glusman
Journal:  Nucleic Acids Res       Date:  2014-05-06       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.