Literature DB >> 33922024

Tumor Long Interspersed Nucleotide Element-1 (LINE-1) Hypomethylation in Relation to Age of Colorectal Cancer Diagnosis and Prognosis.

Naohiko Akimoto1,2, Melissa Zhao1, Tomotaka Ugai1,3, Rong Zhong1,3,4, Mai Chan Lau1, Kenji Fujiyoshi1, Junko Kishikawa1, Koichiro Haruki1, Kota Arima1, Tyler S Twombly1, Xuehong Zhang5,6, Edward L Giovannucci3,5,6, Kana Wu3,5,6, Mingyang Song6,7,8, Andrew T Chan5,7,8,9, Yin Cao10,11,12, Jeffrey A Meyerhardt13, Kimmie Ng13, Marios Giannakis13,14,15, Juha P Väyrynen1,13,16, Jonathan A Nowak1, Shuji Ogino1,3,14,17.   

Abstract

Evidence indicates the pathogenic role of epigenetic alterations in early-onset colorectal cancers diagnosed before age 50. However, features of colorectal cancers diagnosed at age 50-54 (hereafter referred to as "intermediate-onset") remain less known. We hypothesized that tumor long interspersed nucleotide element-1 (LINE-1) hypomethylation might be increasingly more common with decreasing age of colorectal cancer diagnosis. In 1356 colorectal cancers, including 28 early-onset and 66 intermediate-onset cases, the tumor LINE-1 methylation level measured by bisulfite-PCR-pyrosequencing (scaled 0 to 100) showed a mean of 63.6 (standard deviation (SD) 10.1). The mean tumor LINE-1 methylation level decreased with decreasing age (mean 64.7 (SD 10.4) in age ≥70, 62.8 (SD 9.4) in age 55-69, 61.0 (SD 10.2) in age 50-54, and 58.9 (SD 12.0) in age <50; p < 0.0001). In linear regression analysis, the multivariable-adjusted β coefficient (95% confidence interval (CI)) (vs. age ≥70) was -1.38 (-2.47 to -0.30) for age 55-69, -2.82 (-5.29 to -0.34) for age 50-54, and -4.54 (-8.24 to -0.85) for age <50 (Ptrend = 0.0003). Multivariable-adjusted hazard ratios (95% CI) for LINE-1 methylation levels of ≤45, 45-55, and 55-65 (vs. >65) were 2.33 (1.49-3.64), 1.39 (1.05-1.85), and 1.29 (1.02-1.63), respectively (Ptrend = 0.0005). In conclusion, tumor LINE-1 hypomethylation is increasingly more common with decreasing age of colorectal cancer diagnosis, suggesting a role of global DNA hypomethylation in colorectal cancer arising in younger adults.

Entities:  

Keywords:  carcinogenesis; colorectal neoplasms; epigenomics; genomic instability; long interspersed nuclear element; molecular pathology; retrotransposon; screening; transposable element; young-onset cancer

Year:  2021        PMID: 33922024     DOI: 10.3390/cancers13092016

Source DB:  PubMed          Journal:  Cancers (Basel)        ISSN: 2072-6694            Impact factor:   6.639


  61 in total

1.  A simple method for estimating global DNA methylation using bisulfite PCR of repetitive DNA elements.

Authors:  Allen S Yang; Marcos R H Estécio; Ketan Doshi; Yutaka Kondo; Eloiza H Tajara; Jean-Pierre J Issa
Journal:  Nucleic Acids Res       Date:  2004-02-18       Impact factor: 16.971

2.  Colorectal cancer screening for average-risk adults: 2018 guideline update from the American Cancer Society.

Authors:  Andrew M D Wolf; Elizabeth T H Fontham; Timothy R Church; Christopher R Flowers; Carmen E Guerra; Samuel J LaMonte; Ruth Etzioni; Matthew T McKenna; Kevin C Oeffinger; Ya-Chen Tina Shih; Louise C Walter; Kimberly S Andrews; Otis W Brawley; Durado Brooks; Stacey A Fedewa; Deana Manassaram-Baptiste; Rebecca L Siegel; Richard C Wender; Robert A Smith
Journal:  CA Cancer J Clin       Date:  2018-05-30       Impact factor: 508.702

3.  Global patterns and trends in colorectal cancer incidence in young adults.

Authors:  Rebecca L Siegel; Lindsey A Torre; Isabelle Soerjomataram; Richard B Hayes; Freddie Bray; Thomas K Weber; Ahmedin Jemal
Journal:  Gut       Date:  2019-09-05       Impact factor: 23.059

Review 4.  CpG island methylator phenotype in cancer.

Authors:  Jean-Pierre Issa
Journal:  Nat Rev Cancer       Date:  2004-12       Impact factor: 60.716

5.  Epigenomic diversity of colorectal cancer indicated by LINE-1 methylation in a database of 869 tumors.

Authors:  Yoshifumi Baba; Curtis Huttenhower; Katsuhiko Nosho; Noriko Tanaka; Kaori Shima; Aditi Hazra; Eva S Schernhammer; David J Hunter; Edward L Giovannucci; Charles S Fuchs; Shuji Ogino
Journal:  Mol Cancer       Date:  2010-05-27       Impact factor: 27.401

6.  Precision of pyrosequencing assay to measure LINE-1 methylation in colon cancer, normal colonic mucosa, and peripheral blood cells.

Authors:  Natsumi Irahara; Katsuhiko Nosho; Yoshifumi Baba; Kaori Shima; Neal I Lindeman; Aditi Hazra; Eva S Schernhammer; David J Hunter; Charles S Fuchs; Shuji Ogino
Journal:  J Mol Diagn       Date:  2010-01-21       Impact factor: 5.568

7.  LINE-1 hypomethylation is inversely associated with microsatellite instability and CpG island methylator phenotype in colorectal cancer.

Authors:  Shuji Ogino; Takako Kawasaki; Katsuhiko Nosho; Mutsuko Ohnishi; Yuko Suemoto; Gregory J Kirkner; Charles S Fuchs
Journal:  Int J Cancer       Date:  2008-06-15       Impact factor: 7.396

8.  Tumor LINE-1 methylation level and microsatellite instability in relation to colorectal cancer prognosis.

Authors:  Kentaro Inamura; Mai Yamauchi; Reiko Nishihara; Paul Lochhead; Zhi Rong Qian; Aya Kuchiba; Sun A Kim; Kosuke Mima; Yasutaka Sukawa; Seungyoun Jung; Xuehong Zhang; Kana Wu; Eunyoung Cho; Andrew T Chan; Jeffrey A Meyerhardt; Curtis C Harris; Charles S Fuchs; Shuji Ogino
Journal:  J Natl Cancer Inst       Date:  2014-09-04       Impact factor: 13.506

9.  Long interspersed nuclear element-1 hypomethylation in cancer: biology and clinical applications.

Authors:  Nakarin Kitkumthorn; Apiwat Mutirangura
Journal:  Clin Epigenetics       Date:  2011-04-10       Impact factor: 6.551

10.  Tumor LINE-1 methylation level and colorectal cancer location in relation to patient survival.

Authors:  Kosuke Mima; Jonathan A Nowak; Zhi Rong Qian; Yin Cao; Mingyang Song; Yohei Masugi; Yan Shi; Annacarolina da Silva; Mancang Gu; Wanwan Li; Tsuyoshi Hamada; Xuehong Zhang; Kana Wu; Jeffrey A Meyerhardt; Hideo Baba; Edward L Giovannucci; Andrew T Chan; Charles S Fuchs; Shuji Ogino; Reiko Nishihara
Journal:  Oncotarget       Date:  2016-08-23
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  9 in total

Review 1.  Is early-onset cancer an emerging global epidemic? Current evidence and future implications.

Authors:  Tomotaka Ugai; Naoko Sasamoto; Hwa-Young Lee; Mariko Ando; Mingyang Song; Rulla M Tamimi; Ichiro Kawachi; Peter T Campbell; Edward L Giovannucci; Elisabete Weiderpass; Timothy R Rebbeck; Shuji Ogino
Journal:  Nat Rev Clin Oncol       Date:  2022-09-06       Impact factor: 65.011

2.  Immune cell profiles in the tumor microenvironment of early-onset, intermediate-onset, and later-onset colorectal cancer.

Authors:  Tomotaka Ugai; Jennifer Borowsky; Marios Giannakis; Shuji Ogino; Juha P Väyrynen; Mai Chan Lau; Naohiko Akimoto; Sara A Väyrynen; Melissa Zhao; Rong Zhong; Koichiro Haruki; Andressa Dias Costa; Kenji Fujiyoshi; Kota Arima; Kana Wu; Andrew T Chan; Yin Cao; Mingyang Song; Charles S Fuchs; Molin Wang; Jochen K Lennerz; Kimmie Ng; Jeffrey A Meyerhardt; Jonathan A Nowak
Journal:  Cancer Immunol Immunother       Date:  2021-09-16       Impact factor: 6.630

3.  Association of PIK3CA mutation and PTEN loss with expression of CD274 (PD-L1) in colorectal carcinoma.

Authors:  Tomotaka Ugai; Melissa Zhao; Takashi Shimizu; Naohiko Akimoto; Shanshan Shi; Yasutoshi Takashima; Rong Zhong; Mai Chan Lau; Koichiro Haruki; Kota Arima; Kenji Fujiyoshi; Benjamin Langworthy; Yohei Masugi; Annacarolina da Silva; Katsuhiko Nosho; Yoshifumi Baba; Mingyang Song; Andrew T Chan; Molin Wang; Jeffrey A Meyerhardt; Marios Giannakis; Juha P Väyrynen; Jonathan A Nowak; Shuji Ogino
Journal:  Oncoimmunology       Date:  2021-08-02       Impact factor: 8.110

4.  Desmoplastic Reaction, Immune Cell Response, and Prognosis in Colorectal Cancer.

Authors:  Naohiko Akimoto; Juha P Väyrynen; Melissa Zhao; Tomotaka Ugai; Kenji Fujiyoshi; Jennifer Borowsky; Rong Zhong; Koichiro Haruki; Kota Arima; Mai Chan Lau; Junko Kishikawa; Tyler S Twombly; Yasutoshi Takashima; Mingyang Song; Xuehong Zhang; Kana Wu; Andrew T Chan; Jeffrey A Meyerhardt; Marios Giannakis; Jonathan A Nowak; Shuji Ogino
Journal:  Front Immunol       Date:  2022-03-22       Impact factor: 7.561

Review 5.  Transposable Elements and Human Diseases: Mechanisms and Implication in the Response to Environmental Pollutants.

Authors:  Benoît Chénais
Journal:  Int J Mol Sci       Date:  2022-02-25       Impact factor: 5.923

Review 6.  The Role of Diet and Lifestyle in Early-Onset Colorectal Cancer: A Systematic Review.

Authors:  Marta Puzzono; Alessandro Mannucci; Simone Grannò; Raffaella Alessia Zuppardo; Andrea Galli; Silvio Danese; Giulia Martina Cavestro
Journal:  Cancers (Basel)       Date:  2021-11-25       Impact factor: 6.639

7.  Immune depletion of the methylated phenotype of colon cancer is closely related to resistance to immune checkpoint inhibitors.

Authors:  Chengqian Zhong; Tingjiang Xie; Long Chen; Xuejing Zhong; Xinjing Li; Xiumei Cai; Kaihong Chen; Shiqian Lan
Journal:  Front Immunol       Date:  2022-09-08       Impact factor: 8.786

8.  Methodological and Biological Factors Influencing Global DNA Methylation Results Measured by LINE-1 Pyrosequencing Assay in Colorectal Tissue and Liquid Biopsy Samples.

Authors:  Krisztina A Szigeti; Barbara K Barták; Zsófia B Nagy; Sára Zsigrai; Márton Papp; Eszter Márkus; Peter Igaz; István Takács; Béla Molnár; Alexandra Kalmár
Journal:  Int J Mol Sci       Date:  2022-10-01       Impact factor: 6.208

9.  Smoking and Incidence of Colorectal Cancer Subclassified by Tumor-Associated Macrophage Infiltrates.

Authors:  Tomotaka Ugai; Juha P Väyrynen; Koichiro Haruki; Naohiko Akimoto; Mai Chan Lau; Rong Zhong; Junko Kishikawa; Sara A Väyrynen; Melissa Zhao; Kenji Fujiyoshi; Andressa Dias Costa; Jennifer Borowsky; Kota Arima; Jennifer L Guerriero; Charles S Fuchs; Xuehong Zhang; Mingyang Song; Molin Wang; Marios Giannakis; Jeffrey A Meyerhardt; Jonathan A Nowak; Shuji Ogino
Journal:  J Natl Cancer Inst       Date:  2022-01-11       Impact factor: 11.816

  9 in total

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