| Literature DB >> 33916423 |
Kok Tong Wong1, Hasnah Osman1, Thaigarajan Parumasivam2, Unang Supratman3, Mohammad Tasyriq Che Omar4, Mohamad Nurul Azmi1.
Abstract
A total of fourteen pyrazoline derivatives were synthesized through cyclo-condensation reactions byEntities:
Keywords: Mycobacterium tuberculosis; alpha-sterol demethylase; antitubercular agents; molecular docking; pyrazolines
Mesh:
Substances:
Year: 2021 PMID: 33916423 PMCID: PMC8038544 DOI: 10.3390/molecules26072081
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1The general structure of the pyrazoline at position 1-, 3- and 5-.
Scheme 1Synthesis of chalcone and pyrazoline derivatives.
Figure 2Key COSY/HMBC correlations of compound 4a.
Figure 3Key COSY/HMBC correlations of compound 5e.
In vitro anti-tuberculosis activities of pyrazoline derivatives (4a–g and 5a–g) against Mycobacterium tuberculosis H37Ra.
| Compounds | MIC | MBC | ||
|---|---|---|---|---|
| (μg/mL) | (μM) | (μg/mL) | (μM) | |
|
| 6.25 | 17 | 12.5 | 34 |
|
| >200 | >517 | >200 | >517 |
|
| 200 | 511 | >200 | >511 (NC) |
|
| >200 | >500 | >200 | >500 |
|
| 200 | 471 | >200 | >471 (NC) |
|
| 200 | 511 | >200 | >511 (NC) |
|
| >200 | >517 | >200 | >517 |
|
| 25 | 70 | 200 | 562 |
|
| >200 | >535 | >200 | >535 |
|
| 25 | 66 | 100 | 266 |
|
| 25 | 65 | 200 | 519 |
|
| 25 | 61 | 200 | 488 |
|
| 25 | 66 | 200 | 532 |
|
| 50 | 134 | 200 | 537 |
| Isoniazid (Control) | 0.625 | 5 | 0.625 | 5 |
Results are from three independent experiments performed in duplicate. NC = no bactericidal effect even at the highest test concentration.
Binding energy between cytochrome P450 14 alpha-sterol demethylase (CYP51) with compound 4a and controls (fluconazole and isoniazid) for all poses.
| Enzyme | Compound | Pose | Binding |
|---|---|---|---|
| CYP51 |
| 1 | −6.7 |
| 2 | −6.6 | ||
| 3 | −6.5 | ||
| 4 | −6.4 | ||
| 5 | −6.3 | ||
| 1 | −7.1 | ||
| 2 | −6.8 | ||
| Fluconazole | 3 | −6.6 | |
| 4 | −6.4 | ||
| 5 | −6.2 | ||
| Isoniazid | 1 | −6.0 | |
| 2 | −5.5 | ||
| 3 | −5.4 | ||
| 4 | −5.3 | ||
| 5 | −5.0 |
Figure 4Active sites of CYP51 for binding of compound 4a and controls (Fluconazole & Isonizid).
Figure 5Three-dimensional binding modes of compound 4a (pose 1–5) present at the active sites of CYP51. The interaction modes of the most potent pose in CYP51: Figure 5a orientation 4a in pose 1, Figure 5b orientation 4a in pose 2, Figure 5c orientation 4a in pose 3, Figure 5d orientation 4a in pose 4 and Figure 5e orientation 4a in pose 5. Pi-cation/Pi-anion/attractive charge interactions (orange), Pi-sigma interaction (purple), Pi-sulfur (light brown), conventional hydrogen bond interaction (green), unfavorable interaction (red), Pi-Pi T-shaped interaction (pink).
Binding interactions between compound 4a with CYP51 (poses 1 to 5).
| Enzyme | Active Site | Pose | Interacting Unit of Compounds | Protein Residue | Type of Interaction |
|---|---|---|---|---|---|
| CYP51 | 2 | 1 | Phenyl | Pi–Alkyl | |
| Phenyl | ILE27 | Pi–Pi T-shaped | |||
| Phenyl | TRP267 | Pi–Pi T-shaped | |||
| Phenyl | HIS318 | Pi–Cation | |||
| Thioamide | ARG354 | Unfavorable | |||
| Unfavorable | |||||
| 2 | 2 | Phenyl | TRP267 | Pi–Pi Stacked | |
| Phenyl | GLU271 | Pi–Anion | |||
| Pyrazoline ring | ARG274 | H-bond | |||
| Phenyl | Pi–Cation | ||||
| Thioamide | Unfavorable | ||||
| Unfavorable | |||||
| Thioamide | GLU424 | H-bond | |||
| Thioamide | TYR426 | H-bond | |||
| Phenyl | ARG427 | Pi–Alkyl | |||
| 2 | 3 | Phenyl | ILE27 | Pi–Alkyl | |
| Phenyl | ARG274 | Pi–Cation | |||
| Thioamide | LEU317 | H-bond | |||
| Thioamide | HIS318 | Pi–Sulfur | |||
| Pyrazoline ring | ARG354 | H-bond | |||
| Thioamide | Unfavorable | ||||
| Phenyl | ARG427 | Pi–Alkyl | |||
| Thioamide | HIS430 | Pi–Sulfur | |||
| 3 | 4 | Phenyl | THR80 | Pi–Sigma | |
| Thioamide | GLY84 | H-bond | |||
| Thioamide | GLU94 | Attractive charge | |||
| Phenyl | ARG96 | Pi–Cation | |||
| 3 | 5 | Phenyl | THR80 | Pi–Sigma | |
| Thioamide | GLU94 | Attractive charge | |||
| Phenyl | ARG96 | Pi–Cation |