| Literature DB >> 33908603 |
Wan-Yi Yen1, Kayla Stern2, Smruti Mishra3, Luke Helminiak3, Santiago Sanchez-Vicente3, Hwan Keun Kim3.
Abstract
Rickettsia amblyommatis belongs to the spotted fever group of Rickettsia and infects Amblyomma americanum (Lone Star ticks) for transmission to offspring and mammals. Historically, the geographic range of A. americanum was restricted to the southeastern USA. However, recent tick surveys identified the progressive northward invasion of A. americanum, contributing to the increased number of patients with febrile illnesses of unknown etiology after a tick bite in the northeastern USA. While serological evidence strongly suggests that patients are infected with R. amblyommatis, the virulence potential of R. amblyommatis is not well established. Here, we performed a bioinformatic analysis of three genome sequences of R. amblyommatis and identified the presence of multiple putative virulence genes whose products are implicated for spotted fever pathogenesis. Similar to other pathogenic spotted fever rickettsiae, R. amblyommatis replicated intracellularly within the cytoplasm of tissue culture cells. Interestingly, R. amblyommatis displayed defective attachment to microvascular endothelial cells. The attachment defect and slow growth rate of R. amblyommatis required relatively high intravenous infectious doses to produce dose-dependent morbidity and mortality in C3H mice. In summary, our results corroborate clinical evidence that R. amblyommatis can cause mild disease manifestation in some patients.Entities:
Keywords: zzm321990 Amblyomma americanumzzm321990 ; zzm321990 Rickettsia amblyommatiszzm321990 ; animal infection model; endothelial cell; pathogenesis; spotted fever
Mesh:
Year: 2021 PMID: 33908603 PMCID: PMC8110513 DOI: 10.1093/femspd/ftab024
Source DB: PubMed Journal: Pathog Dis ISSN: 2049-632X Impact factor: 3.166
Genomic statistics for R. amblyommatis, R.rickettsii and R. conorii.
|
| Total no. of bases | No. of genes | No. of genes encoding proteins | No. of pseudo genes |
|---|---|---|---|---|
|
| 1 407 796 | 1640 | 1229 | 371 |
|
| 1 257 710 | 1425 | 1234 | 150 |
|
| 1 268 755 | 1532 | 1269 | 223 |
GenBank accession numbers for R. amblyommatis strain GAT-30V, R. rickettsii strain Sheila Smith and R. conorii strain Malish 7 are CP003334.1, CP000848.1 and AE006914.1, respectively.
Figure 1.Schematic diagrams of Mauve gene alignments for (A)R. amblyommatis strain GAT-30V (GenBank accession no. CP003334.1), R. rickettsii strain Sheila Smith (GenBank accession no. CP000848.1) and R. conorii strain Malish 7 (GenBank accession no. AE006914.1) and (B)R. amblyommatis strain GAT-30V (GenBank accession no. CP003334.1), R. amblyommatis strain Ac37 (GenBank accession no. CP012420.1) and R. amblyommatis strain An13 (GenBank accession no. CP015012.1). Blue arrows point to genetic regions only present in R. amblyommatis strain Ac37.
Putative virulence genes conserved in R. amblyommatis.
| Putative virulence factors | Gene numbers in str. GAT-30V | Gene numbers in str. An13 | Gene numbers in str. Ac37 | % identity to | Predicted virulence functions |
|---|---|---|---|---|---|
| Adr1 | MCE_08 045 | A3305_02 145 | AL573_07 330 | 94.63% | Complement resistance |
| Adr2 | MCE_08 050 | A3305_02 150 | AL573_07 335 | 95.09% | Complement resistance |
| Pat1 | MCE_06 135 | A3305_00 385 | AL573_05 575 | 88.57% | Phagolysosome escape |
| RickA | MCE_06 070 | A3305_00 325 | AL573_05 520 | 91.02% | Actin-based motility |
| RARP2 | MCE_06 205 | A3305_00 455 | AL573_05 645 | 90.13% | Effector protein of T4SS |
| Sca0 | MCE_07 995 | A3305_02 110 | AL573_07 295 | 86.65% | Host cell adhesion |
| Sca1 | MCE_00 840 | A3305_02 870 | AL573_00 730 | 87.67% | Host cell adhesion |
| Sca2 | MCE_01 310 | A3305_03 305 | AL573_01 175 | 86.69% | Actin-based motility |
| Sca4 | MCE_04 250 | A3305_06 025 | AL573_03 910 | 93.89% | Cell-to-cell spread |
| Sca5 | MCE_07 010 | A3305_01 180 | AL573_06 365 | 90.27% | Host cell adhesion |
Annotated virulence factors shown to be involved in spotted fever pathogenesis in animal infection models.
Gene numbers in R. amblyommatis strain GAT-30V (GenBank: CP003334.1).
Gene numbers in R. amblyommatis strain An13 (GenBank: CP015012.1).
Gene numbers in R. amblyommatis strain Ac37 (GenBank: CP012420.1).
Percent identity to amino acids in R. rickettsii strain Sheila Smith (GenBank: CP000848.1).
Predicted virulence functions of each gene products.
Genes present in R. amblyommatis strain AC37.
| Gene numbers in | Coding region | Predicted protein |
|---|---|---|
|
| ||
| AL573_05 270 | 999 477–1 000 205 | Guanosine polyphosphate pyrophosphohydrolase |
| Pseudo gene | 1 000 869–1 000 958 | Transposase |
| AL573_05 280 | 1 001 169–1 002 161 | IS110 family transposase |
| AL573_05 285 | 1 002 491–1 005 442 | Hypothetical protein |
| AL573_05 290 | 1 005 559–1 006 263 | GNAT family N-acetyltransferase |
| AL573_05 295 | 1 006 359–1 006 973 | Bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase |
| Pseudo gene | 1 007 184–1 007 327 | Heat-shock protein |
| Pseudo gene | 1 007 561–1 008 505 | Transposase |
| AL573_05 310 | 1 008 587–1 008 913 | Hypothetical protein |
| AL573_05 315 | 1 008 960–1 012 943 | Hypothetical protein |
| AL573_05 320 | 1 012 943–1 013 182 | Hypothetical protein |
|
| ||
| Pseudo gene | 1 025 546–1 027 072 | Conjugal transfer protein TraG |
| Pseudo gene | 1 027 108–1 027 997 | Hypothetical protein |
| Pseudo gene | 1 028 082–1 028 883 | DNA methyltransferase |
| Pseudo gene | 1 029 291–1 030 208 | Histidine kinase |
| Pseudo gene | 1 030 362–1 031 021 | Guanosine polyphosphate pyrophosphohydrolase |
|
| ||
| AL573_05 435 | 1 045 757–1 049 095 | tetratricopeptide repeat protein |
Gene numbers in R. amblyommatis strain Ac37 (GenBank accession no. CP012420.1).
Coding regions annotated in GenBank.
Prediction of protein-coding genes in GenBank.
Figure 2.Rickettsia amblyommatis is defective for attachment to host endothelial cells and replicates at a slower rate. (A)Rickettsia conorii strain Malish 7 and (B)R. amblyommatis strain GAT-30V replications in Vero and HMEC-1 cells were quantified with the plaque assay (mean ± SEM, N = 3). Representative differential interference contrast (DIC) microscopic images of Vero and HMEC-1 cells infected with (C)R. conorii or (D)R. amblyommatis on 2, 4, 6 and 8 days post-inoculation (scale bar, 500 µm). (E)Rickettsia conorii strain Malish 7 and R. amblyommatis strain GAT-30V attachment and invasion into HMEC-1 cells were quantified with the plaque assay on Vero cells (mean ± SEM, N = 3). (F) Representative confocal microscopic images of intracellular R. amblyommatis in HMEC-1 cells (scale bar, 30 µm). *, P < 0.05. Data are representative of two independent experiments.
Figure 3.Rickettsia amblyommatis causes spotted fever pathogenesis in C3H mice. (A) Kaplan-Meier analysis for survival and (B) body weight analysis of C3H mice (N = 5) infected with 5–50 × 105 PFU R. amblyommatis strain GAT-30V. (C and D) Body weight analysis of C3H mice (N = 5) infected with 5–25 × 105 PFU of R. amblyommatis. Data are representative of two independent experiments.