Literature DB >> 33902601

Small ring has big potential: insights into extrachromosomal DNA in cancer.

Yihao Wang1,2, Rui Huang1,2, Guopei Zheng1,2, Jianfeng Shen3,4.   

Abstract

Recent technical advances have led to the discovery of novel functions of extrachromosomal DNA (ecDNA) in multiple cancer types. Studies have revealed that cancer-associated ecDNA shows a unique circular shape and contains oncogenes that are more frequently amplified than that in linear chromatin DNA. Importantly, the ecDNA-mediated amplification of oncogenes was frequently found in most cancers but rare in normal tissues. Multiple reports have shown that ecDNA has a profound impact on oncogene activation, genomic instability, drug sensitivity, tumor heterogeneity and tumor immunology, therefore may offer the potential for cancer diagnosis and therapeutics. Nevertheless, the underlying mechanisms and future applications of ecDNA remain to be determined. In this review, we summarize the basic concepts, biological functions and molecular mechanisms of ecDNA. We also provide novel insights into the fundamental role of ecDNA in cancer.

Entities:  

Keywords:  Chromosomal rearrangement; EcDNA; Epigenetic modification; Oncogene amplification; Tumor heterogeneity

Year:  2021        PMID: 33902601     DOI: 10.1186/s12935-021-01936-6

Source DB:  PubMed          Journal:  Cancer Cell Int        ISSN: 1475-2867            Impact factor:   5.722


  86 in total

1.  Functional Enhancers Shape Extrachromosomal Oncogene Amplifications.

Authors:  Andrew R Morton; Nergiz Dogan-Artun; Zachary J Faber; Graham MacLeod; Cynthia F Bartels; Megan S Piazza; Kevin C Allan; Stephen C Mack; Xiuxing Wang; Ryan C Gimple; Qiulian Wu; Brian P Rubin; Shashirekha Shetty; Stephane Angers; Peter B Dirks; Richard C Sallari; Mathieu Lupien; Jeremy N Rich; Peter C Scacheri
Journal:  Cell       Date:  2019-11-21       Impact factor: 41.582

2.  The architecture and evolution of cancer neochromosomes.

Authors:  Dale W Garsed; Owen J Marshall; Vincent D A Corbin; Arthur Hsu; Leon Di Stefano; Jan Schröder; Jason Li; Zhi-Ping Feng; Bo W Kim; Mark Kowarsky; Ben Lansdell; Ross Brookwell; Ola Myklebost; Leonardo Meza-Zepeda; Andrew J Holloway; Florence Pedeutour; K H Andy Choo; Michael A Damore; Andrew J Deans; Anthony T Papenfuss; David M Thomas
Journal:  Cancer Cell       Date:  2014-11-10       Impact factor: 31.743

Review 3.  Protection of the genome and central protein-coding sequences by non-coding DNA against DNA damage from radiation.

Authors:  Guo-Hua Qiu
Journal:  Mutat Res Rev Mutat Res       Date:  2015-04-28       Impact factor: 5.657

4.  The Hidden Genomic and Transcriptomic Plasticity of Giant Marker Chromosomes in Cancer.

Authors:  Gemma Macchia; Marco Severgnini; Stefania Purgato; Doron Tolomeo; Hilen Casciaro; Ingrid Cifola; Alberto L'Abbate; Anna Loverro; Orazio Palumbo; Massimo Carella; Laurence Bianchini; Giovanni Perini; Gianluca De Bellis; Fredrik Mertens; Mariano Rocchi; Clelia Tiziana Storlazzi
Journal:  Genetics       Date:  2017-12-26       Impact factor: 4.562

Review 5.  Ring chromosomes: from formation to clinical potential.

Authors:  Inna E Pristyazhnyuk; Aleksei G Menzorov
Journal:  Protoplasma       Date:  2017-09-12       Impact factor: 3.356

6.  Double minute chromosomes and the homogeneously staining regions in chromosomes of a human neuroblastoma cell line.

Authors:  G Balaban-Malenbaum; F Gilbert
Journal:  Science       Date:  1977-11-18       Impact factor: 47.728

Review 7.  Extrachromosomal oncogene amplification in tumour pathogenesis and evolution.

Authors:  Roel G W Verhaak; Vineet Bafna; Paul S Mischel
Journal:  Nat Rev Cancer       Date:  2019-05       Impact factor: 60.716

8.  The life history of neochromosomes revealed.

Authors:  Anthony T Papenfuss; David M Thomas
Journal:  Mol Cell Oncol       Date:  2015-01-23

9.  Small extrachromosomal circular DNAs, microDNA, produce short regulatory RNAs that suppress gene expression independent of canonical promoters.

Authors:  Teressa Paulsen; Yoshiyuki Shibata; Pankaj Kumar; Laura Dillon; Anindya Dutta
Journal:  Nucleic Acids Res       Date:  2019-05-21       Impact factor: 16.971

10.  Circular ecDNA promotes accessible chromatin and high oncogene expression.

Authors:  Sihan Wu; Kristen M Turner; Nam Nguyen; Ramya Raviram; Marcella Erb; Jennifer Santini; Jens Luebeck; Utkrisht Rajkumar; Yarui Diao; Bin Li; Wenjing Zhang; Nathan Jameson; M Ryan Corces; Jeffrey M Granja; Xingqi Chen; Ceyda Coruh; Armen Abnousi; Jack Houston; Zhen Ye; Rong Hu; Miao Yu; Hoon Kim; Julie A Law; Roel G W Verhaak; Ming Hu; Frank B Furnari; Howard Y Chang; Bing Ren; Vineet Bafna; Paul S Mischel
Journal:  Nature       Date:  2019-11-20       Impact factor: 69.504

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  4 in total

Review 1.  Revisiting characteristics of oncogenic extrachromosomal DNA as mobile enhancers on neuroblastoma and glioma cancers.

Authors:  Mohsen Karami Fath; Nastaran Karimfar; Andarz Fazlollahpour Naghibi; Shahriyar Shafa; Melika Ghasemi Shiran; Mehran Ataei; Hossein Dehghanzadeh; Mohsen Nabi Afjadi; Tahereh Ghadiri; Zahra Payandeh; Vahideh Tarhriz
Journal:  Cancer Cell Int       Date:  2022-05-25       Impact factor: 6.429

Review 2.  Extrachromosomal Circular DNA: A New Target in Cancer.

Authors:  Pan Wu; Yuhang Liu; Ruijia Zhou; Lingyun Liu; Hongli Zeng; Fang Xiong; Shanshan Zhang; Zhaojian Gong; Wenling Zhang; Can Guo; Fuyan Wang; Ming Zhou; Xuyu Zu; Zhaoyang Zeng; Yong Li; Guiyuan Li; He Huang; Wei Xiong
Journal:  Front Oncol       Date:  2022-04-14       Impact factor: 5.738

Review 3.  3D chromatin architecture and transcription regulation in cancer.

Authors:  Siwei Deng; Yuliang Feng; Siim Pauklin
Journal:  J Hematol Oncol       Date:  2022-05-04       Impact factor: 23.168

4.  The landscape of extrachromosomal circular DNA (eccDNA) in the normal hematopoiesis and leukemia evolution.

Authors:  Tiansheng Zeng; Wenhui Huang; Longzhen Cui; Pei Zhu; Qing Lin; Wenjuan Zhang; Junyi Li; Cong Deng; Zhihua Wu; Zeyong Huang; Zhiyong Zhang; Tingting Qian; Wei Xie; Min Xiao; Yingyu Chen; Lin Fu
Journal:  Cell Death Discov       Date:  2022-09-28
  4 in total

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