Literature DB >> 33901736

Integrative structural biology of HIV-1 capsid protein assemblies: combining experiment and computation.

Juan R Perilla1, Jodi A Hadden-Perilla2, Angela M Gronenborn3, Tatyana Polenova4.   

Abstract

HIV-1 is the causative agent of acquired immunodeficiency syndrome (AIDS), a global pandemic that has claimed 32.7 million lives since 1981. Despite decades of research, there is no cure for the disease, with 38 million people currently infected with HIV. Attractive therapeutic targets for drug development are mature HIV-1 capsids, immature Gag polyprotein assemblies, and Gag maturation intermediates, although their complex architectures, pleomorphism, and dynamics render these assemblies challenging for structural biology. The recent development of integrative approaches, combining experimental and computational methods has enabled atomic-level characterization of structures and dynamics of capsid and Gag assemblies, and revealed their interactions with small-molecule inhibitors and host factors. These structures provide important insights that will guide the development of capsid and maturation inhibitors.
Copyright © 2021 Elsevier B.V. All rights reserved.

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Year:  2021        PMID: 33901736      PMCID: PMC8187302          DOI: 10.1016/j.coviro.2021.03.005

Source DB:  PubMed          Journal:  Curr Opin Virol        ISSN: 1879-6257            Impact factor:   7.121


  51 in total

1.  Magic angle spinning NMR reveals sequence-dependent structural plasticity, dynamics, and the spacer peptide 1 conformation in HIV-1 capsid protein assemblies.

Authors:  Yun Han; Guangjin Hou; Christopher L Suiter; Jinwoo Ahn; In-Ja L Byeon; Andrew S Lipton; Sarah Burton; Ivan Hung; Peter L Gor'kov; Zhehong Gan; William Brey; David Rice; Angela M Gronenborn; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2013-11-13       Impact factor: 15.419

2.  FEZ1 Is Recruited to a Conserved Cofactor Site on Capsid to Promote HIV-1 Trafficking.

Authors:  Pei-Tzu Huang; Brady James Summers; Chaoyi Xu; Juan R Perilla; Viacheslav Malikov; Mojgan H Naghavi; Yong Xiong
Journal:  Cell Rep       Date:  2019-08-14       Impact factor: 9.423

3.  Structure of the carboxyl-terminal dimerization domain of the HIV-1 capsid protein.

Authors:  T R Gamble; S Yoo; F F Vajdos; U K von Schwedler; D K Worthylake; H Wang; J P McCutcheon; W I Sundquist; C P Hill
Journal:  Science       Date:  1997-10-31       Impact factor: 47.728

4.  Dynamic Nuclear Polarization Magic-Angle Spinning Nuclear Magnetic Resonance Combined with Molecular Dynamics Simulations Permits Detection of Order and Disorder in Viral Assemblies.

Authors:  Rupal Gupta; Huilan Zhang; Manman Lu; Guangjin Hou; Marc Caporini; Melanie Rosay; Werner Maas; Jochem Struppe; Jinwoo Ahn; In-Ja L Byeon; Hartmut Oschkinat; Kristaps Jaudzems; Emeline Barbet-Massin; Lyndon Emsley; Guido Pintacuda; Anne Lesage; Angela M Gronenborn; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2019-06-11       Impact factor: 2.991

5.  Quenching protein dynamics interferes with HIV capsid maturation.

Authors:  Mingzhang Wang; Caitlin M Quinn; Juan R Perilla; Huilan Zhang; Randall Shirra; Guangjin Hou; In-Ja Byeon; Christopher L Suiter; Sherimay Ablan; Emiko Urano; Theodore J Nitz; Christopher Aiken; Eric O Freed; Peijun Zhang; Klaus Schulten; Angela M Gronenborn; Tatyana Polenova
Journal:  Nat Commun       Date:  2017-11-24       Impact factor: 14.919

6.  Novel Intersubunit Interaction Critical for HIV-1 Core Assembly Defines a Potentially Targetable Inhibitor Binding Pocket.

Authors:  Pierrick Craveur; Anna T Gres; Karen A Kirby; Dandan Liu; John A Hammond; Yisong Deng; Stefano Forli; David S Goodsell; James R Williamson; Stefan G Sarafianos; Arthur J Olson
Journal:  mBio       Date:  2019-03-12       Impact factor: 7.867

7.  Permeability of the HIV-1 capsid to metabolites modulates viral DNA synthesis.

Authors:  Chaoyi Xu; Douglas K Fischer; Sanela Rankovic; Wen Li; Robert A Dick; Brent Runge; Roman Zadorozhnyi; Jinwoo Ahn; Christopher Aiken; Tatyana Polenova; Alan N Engelman; Zandrea Ambrose; Itay Rousso; Juan R Perilla
Journal:  PLoS Biol       Date:  2020-12-17       Impact factor: 8.029

8.  Intrinsic curvature of the HIV-1 CA hexamer underlies capsid topology and interaction with cyclophilin A.

Authors:  Tao Ni; Samuel Gerard; Gongpu Zhao; Kyle Dent; Jiying Ning; Jing Zhou; Jiong Shi; Jordan Anderson-Daniels; Wen Li; Sooin Jang; Alan N Engelman; Christopher Aiken; Peijun Zhang
Journal:  Nat Struct Mol Biol       Date:  2020-08-03       Impact factor: 15.369

9.  Cyclophilin A stabilizes the HIV-1 capsid through a novel non-canonical binding site.

Authors:  Chuang Liu; Juan R Perilla; Jiying Ning; Manman Lu; Guangjin Hou; Ruben Ramalho; Benjamin A Himes; Gongpu Zhao; Gregory J Bedwell; In-Ja Byeon; Jinwoo Ahn; Angela M Gronenborn; Peter E Prevelige; Itay Rousso; Christopher Aiken; Tatyana Polenova; Klaus Schulten; Peijun Zhang
Journal:  Nat Commun       Date:  2016-03-04       Impact factor: 14.919

Review 10.  HIV-1 Maturation: Lessons Learned from Inhibitors.

Authors:  Alex B Kleinpeter; Eric O Freed
Journal:  Viruses       Date:  2020-08-26       Impact factor: 5.048

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  3 in total

Review 1.  Molecular dynamics of the viral life cycle: progress and prospects.

Authors:  Peter Eugene Jones; Carolina Pérez-Segura; Alexander J Bryer; Juan R Perilla; Jodi A Hadden-Perilla
Journal:  Curr Opin Virol       Date:  2021-08-28       Impact factor: 7.121

2.  Meet the IUPAB councilor - Angela M. Gronenborn.

Authors:  Angela M Gronenborn
Journal:  Biophys Rev       Date:  2021-11-19

Review 3.  Visualising Viruses.

Authors:  Annabel Slater; Naina Nair; Rachael Suétt; Rian Mac Donnchadha; Connor Bamford; Seema Jasim; Daniel Livingstone; Edward Hutchinson
Journal:  J Gen Virol       Date:  2022-01       Impact factor: 3.891

  3 in total

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