Literature DB >> 33900609

Arabidopsis thaliana Mature Endosperm Dissection and Isolation of Genomic DNA from Mature Seed Tissues.

Mayumi Iwasaki1, Luis Lopez-Molina2,3.   

Abstract

We describe methods to separate endosperms and embryos from Arabidopsis thaliana mature seeds in large amounts and to isolate high-quality genomic DNA from those tissues. The resulting materials are suitable for analysis of DNA methylation by bisulfite sequencing or histone modifications by chromatin immunoprecipitation (ChIP).

Entities:  

Keywords:  Chromatin immunoprecipitation; Endosperm; Genomic imprinting; Seed germination; Whole-genome bisulfite sequencing

Year:  2021        PMID： 33900609     DOI： 10.1007/978-1-0716-1134-0_22

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  9 in total

1.  Isolation of genetic material from Arabidopsis seeds.

Authors:  Urszula Piskurewicz; Luis Lopez-Molina
Journal:  Methods Mol Biol       Date:  2011

2.  ARGONAUTE 6 bridges transposable element mRNA-derived siRNAs to the establishment of DNA methylation.

Authors:  Andrea D McCue; Kaushik Panda; Saivageethi Nuthikattu; Sarah G Choudury; Erica N Thomas; R Keith Slotkin
Journal:  EMBO J       Date:  2014-11-11       Impact factor: 11.598

Review 3.  Seeds-An evolutionary innovation underlying reproductive success in flowering plants.

Authors:  Célia Baroux; Ueli Grossniklaus
Journal:  Curr Top Dev Biol       Date:  2018-12-23       Impact factor: 4.897

4.  A Maternally Deposited Endosperm Cuticle Contributes to the Physiological Defects of transparent testa Seeds.

Authors:  Sylvain Loubéry; Julien De Giorgi; Anne Utz-Pugin; Lara Demonsais; Luis Lopez-Molina
Journal:  Plant Physiol       Date:  2018-05-30       Impact factor: 8.340

5.  Dormancy-specific imprinting underlies maternal inheritance of seed dormancy in Arabidopsis thaliana.

Authors:  Urszula Piskurewicz; Mayumi Iwasaki; Daichi Susaki; Christian Megies; Tetsu Kinoshita; Luis Lopez-Molina
Journal:  Elife       Date:  2016-12-22       Impact factor: 8.140

Review 6.  Evolution and function of genomic imprinting in plants.

Authors:  Jessica A Rodrigues; Daniel Zilberman
Journal:  Genes Dev       Date:  2015-12-15       Impact factor: 11.361

Review 7.  Seed Biology Updates - Highlights and New Discoveries in Seed Dormancy and Germination Research.

Authors:  Hiroyuki Nonogaki
Journal:  Front Plant Sci       Date:  2017-04-11       Impact factor: 5.753

8.  Non-canonical RNA-directed DNA methylation participates in maternal and environmental control of seed dormancy.

Authors:  Mayumi Iwasaki; Lena Hyvärinen; Urszula Piskurewicz; Luis Lopez-Molina
Journal:  Elife       Date:  2019-03-26       Impact factor: 8.140

9.  ICE1 and ZOU determine the depth of primary seed dormancy in Arabidopsis independently of their role in endosperm development.

Authors:  Dana R MacGregor; Naichao Zhang; Mayumi Iwasaki; Min Chen; Anuja Dave; Luis Lopez-Molina; Steven Penfield
Journal:  Plant J       Date:  2019-02-18       Impact factor: 6.417
  9 in total

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