| Literature DB >> 33898262 |
Khalil Saadeh1,2, Karan R Chadda1, Shiraz Ahmad1,3, Haseeb Valli3, Nakulan Nanthakumar1,4, Ibrahim T Fazmin1,2, Charlotte E Edling1, Christopher L-H Huang1,3, Kamalan Jeevaratnam1.
Abstract
Mitochondrial dysfunction underlying metabolic disorders such as obesity and diabetes mellitus is strongly associated with cardiac arrhythmias. Murine Pgc-1α-/- hearts replicate disrupted mitochondrial function and model the associated pro-arrhythmic electrophysiological abnormalities. Quantitative PCR, western blotting and histological analysis were used to investigate the molecular basis of the electrophysiological changes associated with mitochondrial dysfunction. qPCR analysis implicated downregulation of genes related to Na+-K+ ATPase activity (Atp1b1), surface Ca2+ entry (Cacna1c), action potential repolarisation (Kcnn1), autonomic function (Adra1d, Adcy4, Pde4d, Prkar2a), and morphological properties (Myh6, Tbx3) in murine Pgc-1α-/- ventricles. Western blotting revealed reduced NaV1.5 but normal Cx43 expression. Histological analysis revealed increased tissue fibrosis in the Pgc-1α-/- ventricles. These present findings identify altered transcription amongst a strategically selected set of genes established as encoding proteins involved in cardiac electrophysiological activation and therefore potentially involved in alterations in ventricular activation and Ca2+ homeostasis in arrhythmic substrate associated with Pgc-1α deficiency. They complement and complete previous studies examining such expression characteristics in the atria and ventricles of Pgc-1 deficient murine hearts.Entities:
Keywords: Arrhythmias; Coactivator-1 transcriptional coactivator (Pgc-1); Conduction velocity; Ion channels; Mitochondria; Peroxisome proliferator activated receptor-γ (PPARγ); Quantitative PCR
Year: 2021 PMID: 33898262 PMCID: PMC8059080 DOI: 10.1016/j.ymgmr.2021.100753
Source DB: PubMed Journal: Mol Genet Metab Rep ISSN: 2214-4269
Fold changes of other miscellaneous genes.
| Gene | Mean WT fold change ( | WT +/− SEM | Mean Pgc-1α−/− fold change (n = 3) | Pgc-1α−/− +/− SEM | Group mean Pgc-1α−/− fold change | Pgc-1α−/− +/− SEM | P value (gene group) | |
|---|---|---|---|---|---|---|---|---|
| 1 | 0.061 | 0.482 | 0.040 | 0.002 | 2.23 | 1.49 | 0.448 | |
| 1 | 0.204 | 9.621 | 4.535 | 0.130 | ||||
| 1 | 0.235 | 0 | 0 | 0 | ||||
| 1 | 0.057 | 1.305 | 0.153 | 0.135 | ||||
| 1 | 0.093 | 0.526 | 0.017 | 0.007 | ||||
| 1 | 0.538 | 1.451 | 1.016 | 0.715 |
Fig. 1Stratifications of individual genes by fold changes and significance level in the comparison of Pgc-1α−/− and WT ventricles. Volcano plot summarizing the effects of Pgc-1α−/− genotype on ventricular gene transcription. Magnitude of change in transcription levels as expressed as log2 transformed fold changes plotted against the level of statistical significance as the unadjusted P-values from independent Student's t-tests.
Fold changes of RNA expression of genes underlying Na+-K+ ATPase activity.
| Gene | Mean WT fold change ( | WT +/− SEM | Mean Pgc-1α−/− fold change (n = 3) | Pgc-1α−/− +/− SEM | Group mean Pgc-1α−/− fold change | Pgc-1α−/− +/− SEM | P value (gene group) | |
|---|---|---|---|---|---|---|---|---|
| 1 | 0.117 | 0.913 | 0.306 | 0.804 | 0.67 | 0.13 | 0.126 | |
| 1 | 0.184 | 0.623 | 0.124 | 0.166 | ||||
| 1 | 0.156 | 0.468 | 0.0434 | 0.030 |
Fold changes of RNA expression of genes underlying ion channels relating to the resting membrane potential.
| Gene | Mean WT fold change ( | WT +/− SEM | Mean Pgc-1α−/− fold change (n = 3) | Pgc-1α−/− +/− SEM | Group mean Pgc-1α−/− fold change | Pgc-1α−/− +/− SEM | P value (gene group) | |
|---|---|---|---|---|---|---|---|---|
| 1 | 0.011 | 2.263 | 0.632 | 0.116 | 1.11 | 0.21 | 0.608 | |
| 1 | 0.179 | 1.065 | 0.180 | 0.811 | ||||
| 1 | 0.171 | 0.851 | 0.233 | 0.638 | ||||
| 1 | 0.190 | 1.060 | 0.226 | 0.850 | ||||
| 1 | 0.123 | 0.562 | 0.138 | 0.076 | ||||
| 1 | 0.082 | 1.182 | 0.062 | 0.153 | ||||
| 1 | 0.120 | 0.802 | 0.092 | 0.259 | ||||
| 1 | 0.138 | 0.855 | 0.059 | 0.388 | ||||
Fold changes of RNA expression of genes underlying ion channels relating to the initiation of excitability.
| Gene | Mean WT fold change ( | WT +/− SEM | Mean Pgc-1α−/− fold change (n = 3) | Pgc-1α−/− +/− SEM | Group mean Pgc-1α−/− fold change | Pgc-1α−/− +/− SEM | P value (gene group) | |
|---|---|---|---|---|---|---|---|---|
| 1 | 0.370 | 0.897 | 0.269 | 0.833 | 0.79 | 0.11 | 0.191 | |
| 1 | 0.217 | 0.900 | 0.204 | 0.754 | ||||
| 1 | 0.269 | 0.578 | 0.081 | 0.207 | ||||
| 1 | 0.190 | 1.060 | 0.226 | 0.850 | 0.77 | 0.22 | 0.476 | |
| 1 | 0.123 | 0.562 | 0.138 | 0.076 |
Fold changes of RNA expression of genes underlying surface Ca2+ homeostasis.
| Gene | Mean WT fold change ( | WT +/− SEM | Mean Pgc-1α−/− fold change (n = 3) | Pgc-11α−/− +/− SEM | P value (individual genes) | Group mean Pgc-1α−/− fold change | Pgc-1α−/− +/− SEM | P value (gene group) |
|---|---|---|---|---|---|---|---|---|
| 1 | 0.016 | 0.477 | 0.081 | 0.003 | 1.16 | 0.30 | 0.621 | |
| 1 | 0.341 | 2.851 | 0.910 | 0.129 | ||||
| 1 | 0.197 | 1.299 | 0.496 | 0.605 | ||||
| 1 | 0.241 | 0.988 | 0.285 | 0.977 | ||||
| 1 | 0.199 | 0.790 | 0.084 | 0.385 | ||||
| 1 | 0.401 | 0.726 | 0.366 | 0.640 | ||||
| 1 | 0.128 | 0.957 | 0.270 | 0.892 |
Fold changes of RNA expression of genes underlying intracellular Ca2+ homeostasis.
| Gene | Mean WT fold change ( | WT +/− SEM | Mean Pgc-1α−/− fold change (n = 3) | Pgc-1α−/− +/− SEM | P value (individual genes) | Group mean Pgc-1α−/− fold change | Pgc-1α−/− +/− SEM | P value (gene group) |
|---|---|---|---|---|---|---|---|---|
| 1 | 0.060 | 1.451 | 0.427 | 0.355 | 1.16 | 0.25 | 0.564 | |
| 1 | 0.021 | 0.895 | 0.157 | 0.544 | ||||
| 1 | 0.186 | 0.541 | 0.057 | 0.078 | ||||
| 1 | 0.208 | 1.960 | 1.194 | 0.472 | ||||
| 1 | 0.078 | 0.932 | 0.072 | 0.553 |
Fold changes of RNA expression of genes underlying ion channels relating to repolarisation.
| Gene | Mean WT fold change ( | WT +/− SEM | Mean Pgc-1α−/− fold change (n = 3) | Pgc-1α−/− +/− SEM | Group mean Pgc-1α−/− fold change | Pgc-1α−/− +/− SEM | P value (gene group) | |
|---|---|---|---|---|---|---|---|---|
| 1 | 0.281 | 2.051 | 0.860 | 0.310 | 1.02 | 0.22 | 0.920 | |
| 1 | 0.112 | 0.646 | 0.101 | 0.079 | ||||
| 1 | 0.155 | 0.731 | 0.147 | 0.275 | ||||
| 1 | 0.151 | 1.041 | 0.187 | 0.872 | ||||
| 1 | 0.110 | 0.592 | 0.070 | 0.0350 | ||||
| 1 | 0.156 | 1.080 | 0.473 | 0.881 | ||||
| 1 | 0.175 | 1.575 | 0.420 | 0.275 |
Fold changes of RNA expression of genes underlying adrenergic and cholinergic receptors.
| Gene | Mean WT fold change ( | WT +/− SEM | Mean Pgc-1α−/− fold change (n = 3) | Pgc-1α−/− +/− SEM | Group mean Pgc-1α−/− fold change | Pgc-1α−/− +/− SEM | P value (gene group) | |
|---|---|---|---|---|---|---|---|---|
| 1 | 0.114 | 0.9950 | 0.248 | 0.986 | 0.88 | 0.14 | 0.432 | |
| 1 | 0.114 | 0.873 | 0.175 | 0.575 | ||||
| 1 | 0.206 | 0.236 | 0.082 | 0.0261 | ||||
| 1 | 0.198 | 0.862 | 0.271 | 0.702 | ||||
| 1 | 0.226 | 1.302 | 0.395 | 0.543 | ||||
| 1 | 0.137 | 0.996 | 0.388 | 0.992 |
Fold changes of RNA expression of genes underlying the cAMP pathway.
| Gene | Mean WT fold change ( | WT +/− SEM | Mean Pgc-1α−/− fold change (n = 3) | Pgc-1α−/− +/− SEM | P value (individual genes) | Group mean Pgc-1α−/− fold change | Pgc-1α−/− +/− SEM | P value (gene group) |
|---|---|---|---|---|---|---|---|---|
| 1 | 0.091 | 0.568 | 0.067 | 0.019 | 0.99 | 0.16 | 0.941 | |
| 1 | 0.122 | 1.461 | 0.338 | 0.269 | ||||
| 1 | 0.229 | 0.742 | 0.105 | 0.364 | ||||
| 1 | 0.188 | 0.695 | 0.108 | 0.232 | ||||
| 1 | 0.090 | 0.551 | 0.110 | 0.034 | ||||
| 1 | 0.162 | 0.904 | 0.192 | 0.723 | ||||
| 1 | 0.167 | 1.731 | 0.349 | 0.132 | ||||
| 1 | 0.071 | 0.661 | 0.097 | 0.047 | ||||
| 1 | 0.332 | 1.580 | 0.529 | 0.406 |
Fold changes of RNA expression of genes underlying fibrotic markers.
| Gene | Mean WT fold change ( | WT +/− SEM | Mean Pgc-1α−/− fold change (n = 3) | Pgc-1α−/− +/− SEM | Group mean Pgc-1α−/− fold change | Pgc-1α−/− +/− SEM | P value (gene group) | |
|---|---|---|---|---|---|---|---|---|
| 1 | 0.178 | 0.774 | 0.221 | 0.471 | 1.19 | 0.24 | 0.478 | |
| 1 | 0.370 | 1.327 | 0.374 | 0.569 | ||||
| 1 | 0.596 | 1.806 | 1.429 | 0.630 | ||||
| 1 | 0.103 | 0.862 | 0.052 | 0.297 |
Fig. 2(A) NaV1.5 expression levels in WT (N = 4) and Pgc-1α−/− (N = 4) ventricles obtained by densitometric analysis and their representative Western blots including the housekeeping protein. (B) Cx43 expression levels in WT (N = 4) and Pgc-1α−/− (N = 4) ventricles obtained by densitometric analysis and their representative Western blots including the housekeeping protein. Initial bicinchoninic acid (BCA) assay estimate of lysate protein concentration determined lysate volumes ensuring equal amounts of protein in each well. Measurements made along with a further control housekeeping protein (β -tubulin (A), β-actin (B)) not affected by the difference in genotype, for normalization of the protein of interest to control for any residual variation in amount of protein loaded in each well.
Fig. 3(A) Shows percentage fibrotic tissue in WT (N = 8) and Pgc-1α−/− (N = 9) ventricles obtained by histological analysis. (B) Shows representative example of the absence of fibrotic change in old WT ventricles (i) and the presence of fibrotic change in old Pgc-1α−/− ventricles obtained by histological analysis (length of scale bar: 250 μm).
Fig. 4Molecules implicated in electrophysiological changes with mitochondrial dysfunction. Solid lines: changes suggested in the present experiments. Dotted lines: other relevant changes discussed in the paper reported in other experiments. Arrow-end: positive effects increasing activity/expression; straight horizontal-end: negative effects decreasing activity/ expression. Created using BioRender.com.