Literature DB >> 33893309

Brockarchaeota, a novel archaeal phylum with unique and versatile carbon cycling pathways.

Valerie De Anda1, Lin-Xing Chen2, Nina Dombrowski1,3, Zheng-Shuang Hua4, Hong-Chen Jiang5, Jillian F Banfield2,6, Wen-Jun Li7,8, Brett J Baker9.   

Abstract

Geothermal environments, such as hot springs and hydrothermal vents, are hotspots for carbon cycling and contain many poorly described microbial taxa. Here, we reconstructed 15 archaeal metagenome-assembled genomes (MAGs) from terrestrial hot spring sediments in China and deep-sea hydrothermal vent sediments in Guaymas Basin, Gulf of California. Phylogenetic analyses of these MAGs indicate that they form a distinct group within the TACK superphylum, and thus we propose their classification as a new phylum, 'Brockarchaeota', named after Thomas Brock for his seminal research in hot springs. Based on the MAG sequence information, we infer that some Brockarchaeota are uniquely capable of mediating non-methanogenic anaerobic methylotrophy, via the tetrahydrofolate methyl branch of the Wood-Ljungdahl pathway and reductive glycine pathway. The hydrothermal vent genotypes appear to be obligate fermenters of plant-derived polysaccharides that rely mostly on substrate-level phosphorylation, as they seem to lack most respiratory complexes. In contrast, hot spring lineages have alternate pathways to increase their ATP yield, including anaerobic methylotrophy of methanol and trimethylamine, and potentially use geothermally derived mercury, arsenic, or hydrogen. Their broad distribution and their apparent anaerobic metabolic versatility indicate that Brockarchaeota may occupy previously overlooked roles in anaerobic carbon cycling.

Entities:  

Year:  2021        PMID: 33893309     DOI: 10.1038/s41467-021-22736-6

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  58 in total

1.  Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park.

Authors:  Mark A Kozubal; Margaret Romine; Ryan deM Jennings; Zack J Jay; Susannah G Tringe; Doug B Rusch; Jacob P Beam; Lee Ann McCue; William P Inskeep
Journal:  ISME J       Date:  2012-11-15       Impact factor: 10.302

2.  A new view of the tree of life.

Authors:  Laura A Hug; Brett J Baker; Karthik Anantharaman; Christopher T Brown; Alexander J Probst; Cindy J Castelle; Cristina N Butterfield; Alex W Hernsdorf; Yuki Amano; Kotaro Ise; Yohey Suzuki; Natasha Dudek; David A Relman; Kari M Finstad; Ronald Amundson; Brian C Thomas; Jillian F Banfield
Journal:  Nat Microbiol       Date:  2016-04-11       Impact factor: 17.745

Review 3.  Archaea and the origin of eukaryotes.

Authors:  Laura Eme; Anja Spang; Jonathan Lombard; Courtney W Stairs; Thijs J G Ettema
Journal:  Nat Rev Microbiol       Date:  2017-11-10       Impact factor: 60.633

4.  Metabolic activity analyses demonstrate that Lokiarchaeon exhibits homoacetogenesis in sulfidic marine sediments.

Authors:  William D Orsi; Aurèle Vuillemin; Paula Rodriguez; Ömer K Coskun; Gonzalo V Gomez-Saez; Gaute Lavik; Volker Mohrholz; Timothy G Ferdelman
Journal:  Nat Microbiol       Date:  2019-12-23       Impact factor: 17.745

5.  New Microbial Biodiversity in Marine Sediments.

Authors:  Brett J Baker; Kathryn E Appler; Xianzhe Gong
Journal:  Ann Rev Mar Sci       Date:  2020-08-03

6.  Marsarchaeota are an aerobic archaeal lineage abundant in geothermal iron oxide microbial mats.

Authors:  Zackary J Jay; Jacob P Beam; Mensur Dlakić; Douglas B Rusch; Mark A Kozubal; William P Inskeep
Journal:  Nat Microbiol       Date:  2018-05-14       Impact factor: 17.745

7.  Proposal of the reverse flow model for the origin of the eukaryotic cell based on comparative analyses of Asgard archaeal metabolism.

Authors:  Anja Spang; Courtney W Stairs; Nina Dombrowski; Laura Eme; Jonathan Lombard; Eva F Caceres; Chris Greening; Brett J Baker; Thijs J G Ettema
Journal:  Nat Microbiol       Date:  2019-04-01       Impact factor: 17.745

Review 8.  Diversity, ecology and evolution of Archaea.

Authors:  Brett J Baker; Valerie De Anda; Kiley W Seitz; Nina Dombrowski; Alyson E Santoro; Karen G Lloyd
Journal:  Nat Microbiol       Date:  2020-05-04       Impact factor: 17.745

9.  Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota.

Authors:  Zheng-Shuang Hua; Yan-Ni Qu; Qiyun Zhu; En-Min Zhou; Yan-Ling Qi; Yi-Rui Yin; Yang-Zhi Rao; Ye Tian; Yu-Xian Li; Lan Liu; Cindy J Castelle; Brian P Hedlund; Wen-Sheng Shu; Rob Knight; Wen-Jun Li
Journal:  Nat Commun       Date:  2018-07-19       Impact factor: 14.919

10.  Asgard archaea capable of anaerobic hydrocarbon cycling.

Authors:  Kiley W Seitz; Nina Dombrowski; Laura Eme; Anja Spang; Jonathan Lombard; Jessica R Sieber; Andreas P Teske; Thijs J G Ettema; Brett J Baker
Journal:  Nat Commun       Date:  2019-04-23       Impact factor: 14.919

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  2 in total

1.  Relationship Analysis of Inorganic Arsenic Exposure and Metabolic Syndrome Based on Propensity Score Matching in Xinjiang, China.

Authors:  Yanwu Nie; Chenchen Wang; Lei Yang; Zhen Yang; Yahong Sun; Maozai Tian; Yuhua Ma; Yuxia Zhang; Yimu Yuan; Liping Zhang
Journal:  Diabetes Metab Syndr Obes       Date:  2022-03-25       Impact factor: 3.168

2.  Genome-centric insight into metabolically active microbial population in shallow-sea hydrothermal vents.

Authors:  Xiaofeng Chen; Kai Tang; Mu Zhang; Shujing Liu; Mingming Chen; Peiwen Zhan; Wei Fan; Chen-Tung Arthur Chen; Yao Zhang
Journal:  Microbiome       Date:  2022-10-14       Impact factor: 16.837

  2 in total

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