Literature DB >> 33881706

Dynamic brain effective connectivity analysis based on low-rank canonical polyadic decomposition: application to epilepsy.

Pierre-Antoine Chantal1, Ahmad Karfoul2, Anca Nica3, Régine Le Bouquin Jeannès2.   

Abstract

In this paper, a new method to track brain effective connectivity networks in the context of epilepsy is proposed. It relies on the combination of partial directed coherence with a constrained low-rank canonical polyadic tensor decomposition. With such combination being established, the most dominating directed graph structures underlying each time window of intracerebral electroencephalographic signals are optimally inferred. Obtained time and frequency signatures of inferred brain networks allow respectively to track the time evolution of these networks and to define frequency bands on which they are operating. Besides, the proposed method allows also to track brain connectivity networks through several epileptic seizures of the same patient. Understanding the most dominating directed graph structures over epileptic seizures and investigating their behavior over time and frequency plans are henceforth possible. Since only few but the the most important directed connections in the graph structure are of interest and also for a meaningful interpretation of obtained signatures to be guaranteed, the low-rank canonical polyadic tensor decomposition is prompted respectively by the sparsity and the non-negativity constraints on the tensor loading matrices. The main objective of this contribution is to propose a new way of tracking brain networks in the context of epileptic iEEG data by identifying the most dominant effective connectivity patterns underlying the observed iEEG signals at each time window. The performance of the proposed method is firstly evaluated on simulated data imitating brain activities and secondly on real intracerebral electroencephalographic signals obtained from an epileptic patient. The partial directed coherence-based tensor has been decomposed into space, time, and frequency signatures in accordance with the expected ground truth for each consecutive sequence of the simulated data. The method is also in accordance with the clinical expertise for iEEG epileptic signals, where the signatures were investigated through a simultaneous multi-seizure analysis.

Entities:  

Keywords:  Canonical polyadic decomposition; Effective connectivity; Partial directed coherence

Year:  2021        PMID: 33881706     DOI: 10.1007/s11517-021-02325-x

Source DB:  PubMed          Journal:  Med Biol Eng Comput        ISSN: 0140-0118            Impact factor:   2.602


  18 in total

1.  Partial directed coherence: a new concept in neural structure determination.

Authors:  L A Baccalá; K Sameshima
Journal:  Biol Cybern       Date:  2001-06       Impact factor: 2.086

2.  Estimation of the effective and functional human cortical connectivity with structural equation modeling and directed transfer function applied to high-resolution EEG.

Authors:  Laura Astolfi; Febo Cincotti; Donatella Mattia; Serenella Salinari; Claudio Babiloni; Alessandra Basilisco; Paolo Maria Rossini; Lei Ding; Ying Ni; Bin He; Maria Grazia Marciani; Fabio Babiloni
Journal:  Magn Reson Imaging       Date:  2004-12       Impact factor: 2.546

3.  Reconstructing cortical current density by exploring sparseness in the transform domain.

Authors:  Lei Ding
Journal:  Phys Med Biol       Date:  2009-04-08       Impact factor: 3.609

4.  MR diffusion tensor spectroscopy and imaging.

Authors:  P J Basser; J Mattiello; D LeBihan
Journal:  Biophys J       Date:  1994-01       Impact factor: 4.033

5.  Epilepsy surgery in Belgium, the experience in Gent.

Authors:  P Boon; T Vandekerckhove; E Achten; E Thiery; L Goossens; K Vonck; M D'Have; G Van Hoey; B Vanrumste; B Legros; L Defreyne; J De Reuck
Journal:  Acta Neurol Belg       Date:  1999-12       Impact factor: 2.396

Review 6.  Review of the methods of determination of directed connectivity from multichannel data.

Authors:  Katarzyna J Blinowska
Journal:  Med Biol Eng Comput       Date:  2011-02-05       Impact factor: 2.602

Review 7.  Vagus nerve stimulation for refractory epilepsy.

Authors:  P Boon; K Vonck; J De Reuck; J Caemaert
Journal:  Seizure       Date:  2001-09       Impact factor: 3.184

8.  Comparative performance evaluation of data-driven causality measures applied to brain networks.

Authors:  Angie Fasoula; Yohan Attal; Denis Schwartz
Journal:  J Neurosci Methods       Date:  2013-03-26       Impact factor: 2.390

9.  Vagus nerve stimulation for refractory epilepsy: a Belgian multicenter study.

Authors:  Veerle De Herdt; Paul Boon; Berten Ceulemans; Henri Hauman; Lieven Lagae; Benjamin Legros; Bernard Sadzot; Patrick Van Bogaert; Kenou van Rijckevorsel; Helene Verhelst; Kristl Vonck
Journal:  Eur J Paediatr Neurol       Date:  2007-03-28       Impact factor: 3.140

10.  A DCM for resting state fMRI.

Authors:  Karl J Friston; Joshua Kahan; Bharat Biswal; Adeel Razi
Journal:  Neuroimage       Date:  2013-12-15       Impact factor: 6.556

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