Literature DB >> 33877579

Pikeienuella piscinae gen. nov., sp. nov., a novel genus in the family Rhodobacteraceae.

Jeeeun Park1,2, Young-Sam Kim1, Seong-Jin Kim1, Sang-Eon Kim1, Hyun-Kyoung Jung1,2, Min-Ju Yu1, Young Jae Jeon1,2, Kyoung-Ho Kim3,4.   

Abstract

A novel bacterium, designated strain RR4-56T, was isolated from a biofilter of a seawater recirculating aquaculture system. The 16S rRNA gene sequence analysis showed that the isolate was closely related to Halovulum dunhuangense YYQ-30T (92.6%), Albimonas donghaensis DS2T (91.3%), Pontivivens insulae GYSW-23T (91.3%), and Monaibacterium marinum C7T (90.9%), belonging to the family Rhodobacteraceae. The strain was aerobic, Gram-negative, rod-shaped, oxidasepositive, and catalase-negative. Its optimum temperature, pH, and salinity for growth were 25-30°C, pH 8.5, and 2-3% NaCl (w/v), respectively. Its growth occurred at 15-35°C, pH 5.0-9.5, and 0-7% NaCl (w/v). It contained ubiquinone-10 (Q-10), a respiratory quinone, and the major cellular fatty acids were 11-methyl C18:1 ω7c (31.9%), C18:1 ω6c (30.4%), and C19:0 cyclo ω8c (16.1%). The polar lipids present in the strain were phosphatidylglycerol, an unidentified phospholipid, and an unidentified aminolipid. The strain had one 4,373,045 bp circular chromosome with G + C contents of 65.9 mol% including 4,169 genes, 4,118 coding sequences (CDSs), 3 rRNAs, and 45 tRNAs. Genome annotation predicted some gene clusters related to the degradation of several types of organic matter such as protocatechuate, catechol, and phthalate. Based on the polyphasic characteristics, RR4-56T represents a novel genus and species in the family Rhodobacteraceae, for which the name Pikeienuella piscinae gen. nov., sp. nov. was proposed. The type strain is RR4-56T (= KCTC 52648T = DSM 107918T).

Entities:  

Keywords:  Pikeienuella piscinae; Rhodobacteraceae; new genus; recirculating aquaculture system

Year:  2021        PMID: 33877579     DOI: 10.1007/s12275-021-0678-7

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  32 in total

1.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

Authors:  Robert C Edgar
Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

Review 2.  Overview of the marine roseobacter lineage.

Authors:  Alison Buchan; José M González; Mary Ann Moran
Journal:  Appl Environ Microbiol       Date:  2005-10       Impact factor: 4.792

Review 3.  Microbial degradation of phthalates: biochemistry and environmental implications.

Authors:  Matthias Boll; Robin Geiger; Madan Junghare; Bernhard Schink
Journal:  Environ Microbiol Rep       Date:  2019-08-21       Impact factor: 3.541

4.  Rhodobacteraceae are the key members of the microbial community of the initial biofilm formed in Eastern Mediterranean coastal seawater.

Authors:  Hila Elifantz; Gilad Horn; Meir Ayon; Yehuda Cohen; Dror Minz
Journal:  FEMS Microbiol Ecol       Date:  2013-04-18       Impact factor: 4.194

5.  Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.

Authors:  Chen-Shan Chin; David H Alexander; Patrick Marks; Aaron A Klammer; James Drake; Cheryl Heiner; Alicia Clum; Alex Copeland; John Huddleston; Evan E Eichler; Stephen W Turner; Jonas Korlach
Journal:  Nat Methods       Date:  2013-05-05       Impact factor: 28.547

6.  Monaibacterium marinum, gen. nov, sp. nov, a new member of the Alphaproteobacteria isolated from seawater of Menai Straits, Wales, UK.

Authors:  Tatyana N Chernikova; James Dallimore; Heinrich Lünsdorf; Hermann J Heipieper; Peter N Golyshin
Journal:  Int J Syst Evol Microbiol       Date:  2017-08-25       Impact factor: 2.747

7.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

8.  Description of Palleronia rufa sp. nov., a biofilm-forming and AHL-producing Rhodobacteraceae, reclassification of Hwanghaeicola aestuarii as Palleronia aestuarii comb. nov., Maribius pontilimi as Palleronia pontilimi comb. nov., Maribius salinus as Palleronia salina comb. nov., Maribius pelagius as Palleronia pelagia comb. nov. and emended description of the genus Palleronia.

Authors:  Claudie Barnier; Camille Clerissi; Raphaël Lami; Laurent Intertaglia; Philippe Lebaron; Régis Grimaud; Laurent Urios
Journal:  Syst Appl Microbiol       Date:  2019-09-23       Impact factor: 4.022

9.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

10.  PHASTER: a better, faster version of the PHAST phage search tool.

Authors:  David Arndt; Jason R Grant; Ana Marcu; Tanvir Sajed; Allison Pon; Yongjie Liang; David S Wishart
Journal:  Nucleic Acids Res       Date:  2016-05-03       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.