Literature DB >> 33875997

Determining electron-nucleus distances and Fermi contact couplings from ENDOR spectra.

Stephan Pribitzer1, Donald Mannikko, Stefan Stoll.   

Abstract

The hyperfine coupling between an electron spin and a nuclear spin depends on the Fermi contact coupling aiso and, through dipolar coupling, the distance r between the electron and the nucleus. It is measured with electron-nuclear double resonance (ENDOR) spectroscopy and provides insight into the electronic and spatial structure of paramagnetic centers. The analysis and interpretation of ENDOR spectra is commonly done by ordinary least-squares fitting. As this is an ill-posed, inverse mathematical problem, this is challenging, in particular for spectra that show features from several nuclei or where the hyperfine coupling parameters are distributed. We introduce a novel Tikhonov-type regularization approach that analyzes an experimental ENDOR spectrum in terms of a complete non-parametric distribution over r and aiso. The approach uses a penalty function similar to the cross entropy between the fitted distribution and a Bayesian prior distribution that is derived from density functional theory calculations. Additionally, we show that smoothness regularization, commonly used for a similar purpose in double electron-electron resonance (DEER) spectroscopy, is not suited for ENDOR. We demonstrate that the novel approach is able to identify and quantitate ligand protons with electron-nucleus distances between 4 and 9 Å in a series of vanadyl porphyrin compounds.

Entities:  

Year:  2021        PMID: 33875997      PMCID: PMC8738844          DOI: 10.1039/d1cp00229e

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  20 in total

1.  EasySpin, a comprehensive software package for spectral simulation and analysis in EPR.

Authors:  Stefan Stoll; Arthur Schweiger
Journal:  J Magn Reson       Date:  2005-09-26       Impact factor: 2.229

2.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

3.  High-Resolution ENDOR Spectroscopy Combined with Quantum Chemical Calculations Reveals the Structure of Nitrogenase Janus Intermediate E4(4H).

Authors:  Veronika Hoeke; Laura Tociu; David A Case; Lance C Seefeldt; Simone Raugei; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2019-07-16       Impact factor: 15.419

4.  Substrate binding to NO-ferro-naphthalene 1,2-dioxygenase studied by high-resolution Q-band pulsed 2H-ENDOR spectroscopy.

Authors:  Tran Chin Yang; Matt D Wolfe; Matthew B Neibergall; Yasmina Mekmouche; John D Lipscomb; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2003-06-11       Impact factor: 15.419

5.  Direct detection of a hydrogen ligand in the [NiFe] center of the regulatory H2-sensing hydrogenase from Ralstonia eutropha in its reduced state by HYSCORE and ENDOR spectroscopy.

Authors:  Marc Brecht; Maurice van Gastel; Thorsten Buhrke; Bärbel Friedrich; Wolfgang Lubitz
Journal:  J Am Chem Soc       Date:  2003-10-29       Impact factor: 15.419

6.  Optimal Tikhonov regularization for DEER spectroscopy.

Authors:  Thomas H Edwards; Stefan Stoll
Journal:  J Magn Reson       Date:  2018-02-01       Impact factor: 2.229

7.  Simulating suppression effects in Pulsed ENDOR, and the 'hole in the middle' of Mims and Davies ENDOR Spectra.

Authors:  Peter E Doan; Nicholas S Lees; Muralidharan Shanmugam; Brian M Hoffman
Journal:  Appl Magn Reson       Date:  2010-01-01       Impact factor: 0.831

8.  Serine is the molecular source of the NH(CH2)2 bridgehead moiety of the in vitro assembled [FeFe] hydrogenase H-cluster.

Authors:  Guodong Rao; Lizhi Tao; R David Britt
Journal:  Chem Sci       Date:  2019-12-18       Impact factor: 9.825

9.  A [4Fe-4S]-Fe(CO)(CN)-L-cysteine intermediate is the first organometallic precursor in [FeFe] hydrogenase H-cluster bioassembly.

Authors:  Guodong Rao; Lizhi Tao; Daniel L M Suess; R David Britt
Journal:  Nat Chem       Date:  2018-04-09       Impact factor: 24.427

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