Literature DB >> 20161480

Simulating suppression effects in Pulsed ENDOR, and the 'hole in the middle' of Mims and Davies ENDOR Spectra.

Peter E Doan1, Nicholas S Lees, Muralidharan Shanmugam, Brian M Hoffman.   

Abstract

All pulsed ENDOR techniques, and in particular the Mims and Davies sequences, suffer from detectability biases ('blindspots') that are directly correlated to the size of the hyperfine interactions of coupled nuclei. Our efforts at ENDOR 'crystallography' and 'mechanism determination' with these techniques has led our group to refine our simulations of pulsed ENDOR spectra to take into account these biases, and we here describe the process and illustrate it with several examples. We first focus on an issue whose major significance is not widely appreciated, the 'hole in the middle' of pulsed ENDOR spectra caused by the n = 0 suppression hole in Mims ENDOR and by the analogous A→0 suppression in Davies ENDOR (Section I). This section discusses the issue for nuclei with I = ½ and also for (2)H (I = 1), using the treatment of Section II. In Section II we discuss the general treatment of suppression effects for I = 1, illustrating it with a treatment of Mims suppression for (14)N (I = 1) (Section II).

Entities:  

Year:  2010        PMID: 20161480      PMCID: PMC2794149          DOI: 10.1007/s00723-009-0083-6

Source DB:  PubMed          Journal:  Appl Magn Reson        ISSN: 0937-9347            Impact factor:   0.831


  10 in total

Review 1.  ENDOR of metalloenzymes.

Authors:  Brian M Hoffman
Journal:  Acc Chem Res       Date:  2003-07       Impact factor: 22.384

Review 2.  Electron-nuclear double resonance spectroscopy (and electron spin-echo envelope modulation spectroscopy) in bioinorganic chemistry.

Authors:  Brian M Hoffman
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-17       Impact factor: 11.205

3.  How an enzyme tames reactive intermediates: positioning of the active-site components of lysine 2,3-aminomutase during enzymatic turnover as determined by ENDOR spectroscopy.

Authors:  Nicholas S Lees; Dawei Chen; Charles J Walsby; Elham Behshad; Perry A Frey; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2006-08-09       Impact factor: 15.419

4.  Protein structure and mechanism studied by electron nuclear double resonance spectroscopy.

Authors:  V J DeRose; B M Hoffman
Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

5.  35 GHz ENDOR characterization of the "very rapid" signal of xanthine oxidase reacted with 2-hydroxy-6-methylpurine (13C8): evidence against direct Mo-C8 interaction.

Authors:  P Manikandan; E Y Choi; R Hille; B M Hoffman
Journal:  J Am Chem Soc       Date:  2001-03-21       Impact factor: 15.419

6.  Modulation of substrate binding to naphthalene 1,2-dioxygenase by rieske cluster reduction/oxidation.

Authors:  Tran-Chin Yang; Matt D Wolfe; Matthew B Neibergall; Yasmina Mekmouche; John D Lipscomb; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2003-02-26       Impact factor: 15.419

7.  Product binding to the diiron(III) and mixed-valence diiron centers of methane monooxygenase hydroxylase studied by (1,2)H and (19)F ENDOR spectroscopy.

Authors:  Stoyan K Smoukov; Daniel A Kopp; Ann M Valentine; Roman Davydov; Stephen J Lippard; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2002-03-20       Impact factor: 15.419

8.  Substrate binding to NO-ferro-naphthalene 1,2-dioxygenase studied by high-resolution Q-band pulsed 2H-ENDOR spectroscopy.

Authors:  Tran Chin Yang; Matt D Wolfe; Matthew B Neibergall; Yasmina Mekmouche; John D Lipscomb; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2003-06-11       Impact factor: 15.419

9.  ENDOR characterization of a synthetic diiron hydrazido complex as a model for nitrogenase intermediates.

Authors:  Nicholas S Lees; Rebecca L McNaughton; Wilda Vargas Gregory; Patrick L Holland; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2007-12-20       Impact factor: 15.419

10.  Identification of protonated oxygenic ligands of ribonucleotide reductase intermediate X.

Authors:  Muralidharan Shanmugam; Peter E Doan; Nicholas S Lees; Joanne Stubbe; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2009-03-11       Impact factor: 15.419

  10 in total
  12 in total

Review 1.  Advanced paramagnetic resonance spectroscopies of iron-sulfur proteins: Electron nuclear double resonance (ENDOR) and electron spin echo envelope modulation (ESEEM).

Authors:  George E Cutsail; Joshua Telser; Brian M Hoffman
Journal:  Biochim Biophys Acta       Date:  2015-02-14

2.  Why Nature Uses Radical SAM Enzymes so Widely: Electron Nuclear Double Resonance Studies of Lysine 2,3-Aminomutase Show the 5'-dAdo• "Free Radical" Is Never Free.

Authors:  Masaki Horitani; Amanda S Byer; Krista A Shisler; Tilak Chandra; Joan B Broderick; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2015-05-19       Impact factor: 15.419

3.  The structure of formaldehyde-inhibited xanthine oxidase determined by 35 GHz 2H ENDOR spectroscopy.

Authors:  Muralidharan Shanmugam; Bo Zhang; Rebecca L McNaughton; R Adam Kinney; Russ Hille; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2010-10-13       Impact factor: 15.419

4.  EPR and (57)Fe ENDOR investigation of 2Fe ferredoxins from Aquifex aeolicus.

Authors:  George E Cutsail; Peter E Doan; Brian M Hoffman; Jacques Meyer; Joshua Telser
Journal:  J Biol Inorg Chem       Date:  2012-08-08       Impact factor: 3.358

5.  ENDOR spectroscopy and DFT calculations: evidence for the hydrogen-bond network within α2 in the PCET of E. coli ribonucleotide reductase.

Authors:  Tomislav Argirević; Christoph Riplinger; JoAnne Stubbe; Frank Neese; Marina Bennati
Journal:  J Am Chem Soc       Date:  2012-10-16       Impact factor: 15.419

6.  Monovalent Cation Activation of the Radical SAM Enzyme Pyruvate Formate-Lyase Activating Enzyme.

Authors:  Krista A Shisler; Rachel U Hutcheson; Masaki Horitani; Kaitlin S Duschene; Adam V Crain; Amanda S Byer; Eric M Shepard; Ashley Rasmussen; Jian Yang; William E Broderick; Jessica L Vey; Catherine L Drennan; Brian M Hoffman; Joan B Broderick
Journal:  J Am Chem Soc       Date:  2017-08-22       Impact factor: 15.419

7.  Determining electron-nucleus distances and Fermi contact couplings from ENDOR spectra.

Authors:  Stephan Pribitzer; Donald Mannikko; Stefan Stoll
Journal:  Phys Chem Chem Phys       Date:  2021-04-06       Impact factor: 3.676

8.  Hydrogen bond network between amino acid radical intermediates on the proton-coupled electron transfer pathway of E. coli α2 ribonucleotide reductase.

Authors:  Thomas U Nick; Wankyu Lee; Simone Kossmann; Frank Neese; JoAnne Stubbe; Marina Bennati
Journal:  J Am Chem Soc       Date:  2014-12-29       Impact factor: 15.419

9.  Biophysical Characterization of Fluorotyrosine Probes Site-Specifically Incorporated into Enzymes: E. coli Ribonucleotide Reductase As an Example.

Authors:  Paul H Oyala; Kanchana R Ravichandran; Michael A Funk; Paul A Stucky; Troy A Stich; Catherine L Drennan; R David Britt; JoAnne Stubbe
Journal:  J Am Chem Soc       Date:  2016-06-21       Impact factor: 15.419

10.  Exploring the Role of the Central Carbide of the Nitrogenase Active-Site FeMo-cofactor through Targeted 13C Labeling and ENDOR Spectroscopy.

Authors:  Ana Pérez-González; Zhi-Yong Yang; Dmitriy A Lukoyanov; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2021-06-10       Impact factor: 16.383

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