Literature DB >> 3387222

Statistical method for rapid homology search.

A A Mironov1, N N Alexandrov.   

Abstract

A new method for homology search of DNA sequences is suggested. This method may be used to find extensive and not strong homologies with point mutations and deletions. The running program time for comparing sequences is less then the dynamic program algorithms at least at two orders of magnitude. It makes possible to use the method for homology searching throughover the nucleotide bank by personal computers.

Mesh：

Year:  1988        PMID： 3387222      PMCID： PMC336725          DOI： 10.1093/nar/16.11.5169

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  5 in total

1.  A measure of the similarity of sets of sequences not requiring sequence alignment.

Authors:  B E Blaisdell
Journal:  Proc Natl Acad Sci U S A       Date:  1986-07       Impact factor: 11.205

2.  A general method applicable to the search for similarities in the amino acid sequence of two proteins.

Authors:  S B Needleman; C D Wunsch
Journal:  J Mol Biol       Date:  1970-03       Impact factor: 5.469

3.  The evolution and sequence comparison of two recently diverged mouse chromosomal beta--globin genes.

Authors:  D A Konkel; J V Maizel; P Leder
Journal:  Cell       Date:  1979-11       Impact factor: 41.582

4.  Pattern recognition in nucleic acid sequences. I. A general method for finding local homologies and symmetries.

Authors:  W B Goad; M I Kanehisa
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

5.  Rapid similarity searches of nucleic acid and protein data banks.

Authors:  W J Wilbur; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1983-02       Impact factor: 11.205
  5 in total
  1 in total

1.  Distributional regimes for the number of k-word matches between two random sequences.

Authors:  Ross A Lippert; Haiyan Huang; Michael S Waterman
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-08       Impact factor: 11.205
  1 in total

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