Literature DB >> 33870466

Comparative transcriptomics and network pharmacology analysis to identify the potential mechanism of celastrol against osteoarthritis.

Siming Dai1, Hui Wang1, Meng Wang2, Yue Zhang1, Zhiyi Zhang3, Zhiguo Lin4.   

Abstract

INTRODUCTION: Celastrol is a promising therapeutic agent for the treatment of osteoarthritis (OA). However, the mechanism of action of celastrol is unclear. This study was aiming to identify the potential function of celastrol on OA and determine its underlying mechanism.
METHOD: Celastrol targets were collected from web database searches and literature review, while pathogenic OA targets were obtained from Online Mendelian Inheritance in Man (OMIM) and GeneCards databases. Transcriptomics data was sequenced using an Illumina HiSeq 4000 platform. Celastrol-OA overlapping genes were then identified followed by prediction of the potential function and signaling pathways associated with celastrol using gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis. A celastrol-target network was constructed to identify the candidate core targets of celastrol. The predictions were then validated by performing molecular docking and molecular dynamics simulation studies.
RESULTS: In total, 96 genes were identified as the putative celastrol targets for treatment of OA. These genes were possibly involved in cell phenotype changes including response to lipopolysaccharide and oxidative stress as well as in cell apoptosis and aging. The genes also induced the mTOR pathway and AGE-RAGE signaling pathway at the intracellular level. Additionally, results indicated that 13 core targets including mTOR, TP53, MMP9, EGFR, CCND1, MAPK1, STAT3, VEGFA, CASP3, TNF, MYC, ESR1, and PTEN were likely direct targets of celastrol in OA. Finally, mTOR was determined as the most likely therapeutic target of celastrol in OA.
CONCLUSION: This study provides a basic understanding and novel insight into the potential mechanism of celastrol against OA. Key Points • Our study provides a strong indication that further study of celastrol therapy in OA is required. • mTOR is the most likely therapeutic target of celastrol in OA.

Entities:  

Keywords:  Celastrol; Computer-aided drug design; Mechanism; Network pharmacology; Osteoarthritis; Transcriptomics

Year:  2021        PMID: 33870466     DOI: 10.1007/s10067-021-05726-3

Source DB:  PubMed          Journal:  Clin Rheumatol        ISSN: 0770-3198            Impact factor:   2.980


  36 in total

Review 1.  Network pharmacology: the next paradigm in drug discovery.

Authors:  Andrew L Hopkins
Journal:  Nat Chem Biol       Date:  2008-11       Impact factor: 15.040

Review 2.  Network analyses in systems pharmacology.

Authors:  Seth I Berger; Ravi Iyengar
Journal:  Bioinformatics       Date:  2009-07-30       Impact factor: 6.937

3.  Treatment of obesity with celastrol.

Authors:  Junli Liu; Jaemin Lee; Mario Andres Salazar Hernandez; Ralph Mazitschek; Umut Ozcan
Journal:  Cell       Date:  2015-05-21       Impact factor: 41.582

Review 4.  Control of autoimmune inflammation by celastrol, a natural triterpenoid.

Authors:  Shivaprasad H Venkatesha; Steven Dudics; Brian Astry; Kamal D Moudgil
Journal:  Pathog Dis       Date:  2016-07-11       Impact factor: 3.166

Review 5.  What did we learn from 'omics' studies in osteoarthritis.

Authors:  Cristina Ruiz-Romero; Ignacio Rego-Perez; Francisco J Blanco
Journal:  Curr Opin Rheumatol       Date:  2018-01       Impact factor: 5.006

Review 6.  Disease-modifying drugs in osteoarthritis: current understanding and future therapeutics.

Authors:  Win Min Oo; Shirley Pei-Chun Yu; Matthew Sean Daniel; David John Hunter
Journal:  Expert Opin Emerg Drugs       Date:  2018-12-03       Impact factor: 4.191

Review 7.  Treatment of Neurodegenerative Diseases with Bioactive Components of Tripterygium wilfordii.

Authors:  Jianheng Li; Jijun Hao
Journal:  Am J Chin Med       Date:  2019-05-15       Impact factor: 4.667

8.  Celastrol, an inhibitor of heat shock protein 90β potently suppresses the expression of matrix metalloproteinases, inducible nitric oxide synthase and cyclooxygenase-2 in primary human osteoarthritic chondrocytes.

Authors:  Qian-Hai Ding; Ye Cheng; Wei-Ping Chen; Hui-Ming Zhong; Xiang-Hua Wang
Journal:  Eur J Pharmacol       Date:  2013-02-08       Impact factor: 4.432

9.  Celastrol attenuates pain and cartilage damage via SDF-1/CXCR4 signalling pathway in osteoarthritis rats.

Authors:  Weifeng Wang; Chengzhi Ha; Tao Lin; Dawei Wang; Yuanhe Wang; Mingzhi Gong
Journal:  J Pharm Pharmacol       Date:  2017-10-10       Impact factor: 3.765

10.  PubChem: a public information system for analyzing bioactivities of small molecules.

Authors:  Yanli Wang; Jewen Xiao; Tugba O Suzek; Jian Zhang; Jiyao Wang; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2009-06-04       Impact factor: 16.971

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  1 in total

Review 1.  Methodology of network pharmacology for research on Chinese herbal medicine against COVID-19: A review.

Authors:  Yi-Xuan Wang; Zhen Yang; Wen-Xiao Wang; Yu-Xi Huang; Qiao Zhang; Jia-Jia Li; Yu-Ping Tang; Shi-Jun Yue
Journal:  J Integr Med       Date:  2022-09-22
  1 in total

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