Literature DB >> 33864101

A multi-laboratory benchmark study of isothermal titration calorimetry (ITC) using Ca2+ and Mg2+ binding to EDTA.

Adrian Velazquez-Campoy1,2,3,4, Bárbara Claro5, Olga Abian6,7,8,9, Jonas Höring10, Louis Bourlon11, Rafael Claveria-Gimeno6,7,9, Eric Ennifar12, Patrick England11, Jonathan Brad Chaires13, Di Wu14, Grzegorz Piszczek14, Chad Brautigam15, Shih-Chia Tso16, Huaying Zhao17, Peter Schuck17, Sandro Keller18,19,20, Margarida Bastos21.   

Abstract

A small-scale ITC benchmarking study was performed involving 9 biophysics laboratories/facilities, to evaluate inter-laboratory and intra-laboratory basal levels of uncertainty. Our prime goal was to assess a number of important factors that can influence both the data gathered by this technique and the thermodynamic parameter values derived therefrom. In its first part, the study involved 5 laboratories and 13 different instruments, working with centrally prepared samples and the same experimental protocol. The second part involved 4 additional laboratories and 6 more instruments, where the users prepared their own samples according to provided instructions and did the experiments following the same protocol as in the first part. The study design comprised: (1) selecting a minimal set of laboratories; (2) providing very stable samples; (3) providing samples not requiring preparation or manipulation; and (4) providing a well-defined and detailed experimental protocol. Thus, we were able to assess: (i) the variability due to instrument and data analysis performed by each user on centrally prepared samples; (ii) the comparability of data retrieved when using 4 different software packages to analyze the same data, besides the data analysis carried out by the different users on their own experimental results; and (iii) the variability due to local sample preparation (second part of the study). Individual values, as well as averages and standard deviations for the binding parameters for EDTA-cation interaction, were used as metrics for comparing the equilibrium association constant (logK), enthalpy of interaction (ΔH), and the so-called "stoichiometry" (n), a concentration-correction factor.

Entities:  

Keywords:  Benchmark study; Data treatment; Isothermal Titration Calorimetry (ITC); Ligand-binding; Sample preparation; Standard reaction

Mesh:

Substances:

Year:  2021        PMID: 33864101     DOI: 10.1007/s00249-021-01523-7

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  19 in total

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Journal:  Anal Biochem       Date:  2010-11-10       Impact factor: 3.365

4.  High-precision isothermal titration calorimetry with automated peak-shape analysis.

Authors:  Sandro Keller; Carolyn Vargas; Huaying Zhao; Grzegorz Piszczek; Chad A Brautigam; Peter Schuck
Journal:  Anal Chem       Date:  2012-05-14       Impact factor: 6.986

Review 5.  Calorimetry and thermodynamics in drug design.

Authors:  Jonathan B Chaires
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

6.  Biocalorimetry.

Authors:  Jonathan B Chaires; Lee D Hansen; Sandro Keller; Chad A Brautigam; Huaying Zhao; Peter Schuck
Journal:  Methods       Date:  2015-04       Impact factor: 3.608

Review 7.  Entropy-enthalpy compensation: role and ramifications in biomolecular ligand recognition and design.

Authors:  John D Chodera; David L Mobley
Journal:  Annu Rev Biophys       Date:  2013       Impact factor: 12.981

8.  The ABRF-MIRG'02 study: assembly state, thermodynamic, and kinetic analysis of an enzyme/inhibitor interaction.

Authors:  D G Myszka; Y N Abdiche; F Arisaka; O Byron; E Eisenstein; P Hensley; J A Thomson; C R Lombardo; F Schwarz; W Stafford; M L Doyle
Journal:  J Biomol Tech       Date:  2003-12

9.  Why Most Clinical Research Is Not Useful.

Authors:  John P A Ioannidis
Journal:  PLoS Med       Date:  2016-06-21       Impact factor: 11.069

10.  A survey on data reproducibility in cancer research provides insights into our limited ability to translate findings from the laboratory to the clinic.

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Journal:  PLoS One       Date:  2013-05-15       Impact factor: 3.240

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  1 in total

1.  Community-building and promotion of technological excellence in molecular biophysics: the ARBRE-MOBIEU network.

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Journal:  Eur Biophys J       Date:  2021-05       Impact factor: 1.733

  1 in total

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