| Literature DB >> 33864101 |
Adrian Velazquez-Campoy1,2,3,4, Bárbara Claro5, Olga Abian6,7,8,9, Jonas Höring10, Louis Bourlon11, Rafael Claveria-Gimeno6,7,9, Eric Ennifar12, Patrick England11, Jonathan Brad Chaires13, Di Wu14, Grzegorz Piszczek14, Chad Brautigam15, Shih-Chia Tso16, Huaying Zhao17, Peter Schuck17, Sandro Keller18,19,20, Margarida Bastos21.
Abstract
A small-scale ITC benchmarking study was performed involving 9 biophysics laboratories/facilities, to evaluate inter-laboratory and intra-laboratory basal levels of uncertainty. Our prime goal was to assess a number of important factors that can influence both the data gathered by this technique and the thermodynamic parameter values derived therefrom. In its first part, the study involved 5 laboratories and 13 different instruments, working with centrally prepared samples and the same experimental protocol. The second part involved 4 additional laboratories and 6 more instruments, where the users prepared their own samples according to provided instructions and did the experiments following the same protocol as in the first part. The study design comprised: (1) selecting a minimal set of laboratories; (2) providing very stable samples; (3) providing samples not requiring preparation or manipulation; and (4) providing a well-defined and detailed experimental protocol. Thus, we were able to assess: (i) the variability due to instrument and data analysis performed by each user on centrally prepared samples; (ii) the comparability of data retrieved when using 4 different software packages to analyze the same data, besides the data analysis carried out by the different users on their own experimental results; and (iii) the variability due to local sample preparation (second part of the study). Individual values, as well as averages and standard deviations for the binding parameters for EDTA-cation interaction, were used as metrics for comparing the equilibrium association constant (logK), enthalpy of interaction (ΔH), and the so-called "stoichiometry" (n), a concentration-correction factor.Entities:
Keywords: Benchmark study; Data treatment; Isothermal Titration Calorimetry (ITC); Ligand-binding; Sample preparation; Standard reaction
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Year: 2021 PMID: 33864101 DOI: 10.1007/s00249-021-01523-7
Source DB: PubMed Journal: Eur Biophys J ISSN: 0175-7571 Impact factor: 1.733