Literature DB >> 33860980

Human DND1-RRM2 forms a non-canonical domain swapped dimer.

Pooja Kumari1, Neel Sarovar Bhavesh1.   

Abstract

RNA recognition motif (RRM) being the most abundant RNA binding domain in eukaryotes, is a major player in cellular regulation. Several variations in the canonical βαββαβ topology have been observed. We have determined the 2.3 Å crystal structure of the human DND1-RRM2 domain. The structure revealed an interesting non-canonical RRM fold, which is maintained by the formation of a 3D domain swapped dimer between β1 and β4 strands across protomers. We have delineated the structural basis of the stable domain swapped dimer formation using the residue level dynamics of protein explored by NMR spectroscopy and MD simulations. Our structural and dynamics studies substantiate major determinants and molecular basis for domain swapped dimerization observed in the RRM domain.
© 2021 The Protein Society.

Entities:  

Keywords:  DND1; NMR spectroscopy; RNA binding protein; RNA recognition motif; crystal structure; domain swapped dimerization

Mesh:

Substances:

Year:  2021        PMID: 33860980      PMCID: PMC8138521          DOI: 10.1002/pro.4083

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.993


  43 in total

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Review 5.  3D domain swapping, protein oligomerization, and amyloid formation.

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9.  A five-residue motif for the design of domain swapping in proteins.

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10.  Analysis of the DND1 gene in men with sporadic and familial testicular germ cell tumors.

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  2 in total

1.  Human DND1-RRM2 forms a non-canonical domain swapped dimer.

Authors:  Pooja Kumari; Neel Sarovar Bhavesh
Journal:  Protein Sci       Date:  2021-04-26       Impact factor: 6.993

Review 2.  The Role of DND1 in Cancers.

Authors:  Yun Zhang; Jyotsna D Godavarthi; Abie Williams-Villalobo; Shahrazad Polk; Angabin Matin
Journal:  Cancers (Basel)       Date:  2021-07-22       Impact factor: 6.639

  2 in total

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