Literature DB >> 33860304

Parsing Sage and Rosemary in Time: The Machine Learning Race to Crack Olfactory Perception.

Richard C Gerkin1.   

Abstract

Color and pitch perception are largely understandable from characteristics of physical stimuli: the wavelengths of light and sound waves, respectively. By contrast, understanding olfactory percepts from odorous stimuli (volatile molecules) is much more challenging. No intuitive set of molecular features is up to the task. Here in Chemical Senses, the Ray lab reports using a predictive modeling framework-first breaking molecular structure into thousands of features and then using this to train a predictive statistical model on a wide range of perceptual descriptors-to create a tool for predicting the odor character of hundreds of thousands of available but previously uncharacterized molecules (Kowalewski et al. 2021). This will allow future investigators to representatively sample the space of odorous molecules as well as identify previously unknown odorants with a target odor character. Here, I put this work into the context of other modeling efforts and highlight the urgent need for large new datasets and transparent benchmarks for the field to make and evaluate modeling breakthroughs, respectively.
© The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  computation; feature extraction; modeling; olfaction; psychophysics; smell

Mesh:

Substances:

Year:  2021        PMID: 33860304      PMCID: PMC8130506          DOI: 10.1093/chemse/bjab020

Source DB:  PubMed          Journal:  Chem Senses        ISSN: 0379-864X            Impact factor:   3.160


  32 in total

1.  Learning the parts of objects by non-negative matrix factorization.

Authors:  D D Lee; H S Seung
Journal:  Nature       Date:  1999-10-21       Impact factor: 49.962

2.  STEREOCHEMICAL THEORY OF OLFACTION.

Authors:  J E AMOORE
Journal:  Nature       Date:  1963-08-31       Impact factor: 49.962

3.  A novel multigene family may encode odorant receptors: a molecular basis for odor recognition.

Authors:  L Buck; R Axel
Journal:  Cell       Date:  1991-04-05       Impact factor: 41.582

4.  Predicting human olfactory perception from chemical features of odor molecules.

Authors:  Andreas Keller; Richard C Gerkin; Yuanfang Guan; Amit Dhurandhar; Gabor Turu; Bence Szalai; Joel D Mainland; Yusuke Ihara; Chung Wen Yu; Russ Wolfinger; Celine Vens; Leander Schietgat; Kurt De Grave; Raquel Norel; Gustavo Stolovitzky; Guillermo A Cecchi; Leslie B Vosshall; Pablo Meyer
Journal:  Science       Date:  2017-02-20       Impact factor: 47.728

5.  A System-Wide Understanding of the Human Olfactory Percept Chemical Space.

Authors:  Joel Kowalewski; Brandon Huynh; Anandasankar Ray
Journal:  Chem Senses       Date:  2021-01-01       Impact factor: 3.160

6.  Odor quality: semantically generated multidimensional profiles are stable.

Authors:  A Dravnieks
Journal:  Science       Date:  1982-11-19       Impact factor: 47.728

7.  Semantic-free scaling of odor quality.

Authors:  D A Stevens; R J O'Connell
Journal:  Physiol Behav       Date:  1996-07

8.  The number of olfactory stimuli that humans can discriminate is still unknown.

Authors:  Richard C Gerkin; Jason B Castro
Journal:  Elife       Date:  2015-07-07       Impact factor: 8.140

9.  Categorical dimensions of human odor descriptor space revealed by non-negative matrix factorization.

Authors:  Jason B Castro; Arvind Ramanathan; Chakra S Chennubhotla
Journal:  PLoS One       Date:  2013-09-18       Impact factor: 3.240

10.  Olfactory perception of chemically diverse molecules.

Authors:  Andreas Keller; Leslie B Vosshall
Journal:  BMC Neurosci       Date:  2016-08-08       Impact factor: 3.288

View more
  3 in total

1.  Mapping odorant sensitivities reveals a sparse but structured representation of olfactory chemical space by sensory input to the mouse olfactory bulb.

Authors:  Shawn D Burton; Audrey Brown; Thomas P Eiting; Isaac A Youngstrom; Thomas C Rust; Michael Schmuker; Matt Wachowiak
Journal:  Elife       Date:  2022-07-21       Impact factor: 8.713

2.  A behavioral paradigm for measuring perceptual distances in mice.

Authors:  Hirofumi Nakayama; Richard C Gerkin; Dmitry Rinberg
Journal:  Cell Rep Methods       Date:  2022-06-09

3.  Bitter Taste and Olfactory Receptors: Beyond Chemical Sensing in the Tongue and the Nose.

Authors:  Mercedes Alfonso-Prieto
Journal:  J Membr Biol       Date:  2021-06-25       Impact factor: 1.843

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.