Literature DB >> 28219971

Predicting human olfactory perception from chemical features of odor molecules.

Andreas Keller1, Richard C Gerkin2, Yuanfang Guan3, Amit Dhurandhar4, Gabor Turu5,6, Bence Szalai5,6, Joel D Mainland7,8, Yusuke Ihara7,9, Chung Wen Yu7, Russ Wolfinger10, Celine Vens11, Leander Schietgat12, Kurt De Grave12,13, Raquel Norel4, Gustavo Stolovitzky4,14, Guillermo A Cecchi4, Leslie B Vosshall1,15, Pablo Meyer16,14.   

Abstract

It is still not possible to predict whether a given molecule will have a perceived odor or what olfactory percept it will produce. We therefore organized the crowd-sourced DREAM Olfaction Prediction Challenge. Using a large olfactory psychophysical data set, teams developed machine-learning algorithms to predict sensory attributes of molecules based on their chemoinformatic features. The resulting models accurately predicted odor intensity and pleasantness and also successfully predicted 8 among 19 rated semantic descriptors ("garlic," "fish," "sweet," "fruit," "burnt," "spices," "flower," and "sour"). Regularized linear models performed nearly as well as random forest-based ones, with a predictive accuracy that closely approaches a key theoretical limit. These models help to predict the perceptual qualities of virtually any molecule with high accuracy and also reverse-engineer the smell of a molecule.
Copyright © 2017, American Association for the Advancement of Science.

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Year:  2017        PMID: 28219971      PMCID: PMC5455768          DOI: 10.1126/science.aal2014

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  13 in total

1.  Extended-connectivity fingerprints.

Authors:  David Rogers; Mathew Hahn
Journal:  J Chem Inf Model       Date:  2010-05-24       Impact factor: 4.956

2.  On the unpredictability of odor.

Authors:  C S Sell
Journal:  Angew Chem Int Ed Engl       Date:  2006-09-25       Impact factor: 15.336

3.  Odor quality: semantically generated multidimensional profiles are stable.

Authors:  A Dravnieks
Journal:  Science       Date:  1982-11-19       Impact factor: 47.728

4.  Carbon chain length and the stimulus problem in olfaction.

Authors:  Sanne Boesveldt; Mats J Olsson; Johan N Lundström
Journal:  Behav Brain Res       Date:  2010-07-15       Impact factor: 3.332

5.  In search of the structure of human olfactory space.

Authors:  Alexei A Koulakov; Brian E Kolterman; Armen G Enikolopov; Dmitry Rinberg
Journal:  Front Syst Neurosci       Date:  2011-09-15

6.  Molecular complexity determines the number of olfactory notes and the pleasantness of smells.

Authors:  F Kermen; A Chakirian; C Sezille; P Joussain; G Le Goff; A Ziessel; M Chastrette; N Mandairon; A Didier; C Rouby; M Bensafi
Journal:  Sci Rep       Date:  2011-12-22       Impact factor: 4.379

7.  Noise-driven causal inference in biomolecular networks.

Authors:  Robert J Prill; Robert Vogel; Guillermo A Cecchi; Grégoire Altan-Bonnet; Gustavo Stolovitzky
Journal:  PLoS One       Date:  2015-06-01       Impact factor: 3.240

8.  Categorical dimensions of human odor descriptor space revealed by non-negative matrix factorization.

Authors:  Jason B Castro; Arvind Ramanathan; Chakra S Chennubhotla
Journal:  PLoS One       Date:  2013-09-18       Impact factor: 3.240

9.  Predicting odor perceptual similarity from odor structure.

Authors:  Kobi Snitz; Adi Yablonka; Tali Weiss; Idan Frumin; Rehan M Khan; Noam Sobel
Journal:  PLoS Comput Biol       Date:  2013-09-12       Impact factor: 4.475

10.  Olfactory perception of chemically diverse molecules.

Authors:  Andreas Keller; Leslie B Vosshall
Journal:  BMC Neurosci       Date:  2016-08-08       Impact factor: 3.288

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  43 in total

1.  Design of self-assembly dipeptide hydrogels and machine learning via their chemical features.

Authors:  Fei Li; Jinsong Han; Tian Cao; William Lam; Baoer Fan; Wen Tang; Sijie Chen; Kin Lam Fok; Linxian Li
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-20       Impact factor: 11.205

2.  QnAs with Leslie B. Vosshall.

Authors:  Prashant Nair
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-29       Impact factor: 11.205

Review 3.  The role of metals in mammalian olfaction of low molecular weight organosulfur compounds.

Authors:  Eric Block; Victor S Batista; Hiroaki Matsunami; Hanyi Zhuang; Lucky Ahmed
Journal:  Nat Prod Rep       Date:  2017-05-10       Impact factor: 13.423

4.  Optimal compressed sensing strategies for an array of nonlinear olfactory receptor neurons with and without spontaneous activity.

Authors:  Shanshan Qin; Qianyi Li; Chao Tang; Yuhai Tu
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-23       Impact factor: 11.205

5.  Genetic variation across the human olfactory receptor repertoire alters odor perception.

Authors:  C Trimmer; A Keller; N R Murphy; L L Snyder; J R Willer; M H Nagai; N Katsanis; L B Vosshall; H Matsunami; J D Mainland
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-30       Impact factor: 11.205

6.  Key Parameters of Tumor Epitope Immunogenicity Revealed Through a Consortium Approach Improve Neoantigen Prediction.

Authors:  Daniel K Wells; Marit M van Buuren; Kristen K Dang; Vanessa M Hubbard-Lucey; Kathleen C F Sheehan; Katie M Campbell; Andrew Lamb; Jeffrey P Ward; John Sidney; Ana B Blazquez; Andrew J Rech; Jesse M Zaretsky; Begonya Comin-Anduix; Alphonsus H C Ng; William Chour; Thomas V Yu; Hira Rizvi; Jia M Chen; Patrice Manning; Gabriela M Steiner; Xengie C Doan; Taha Merghoub; Justin Guinney; Adam Kolom; Cheryl Selinsky; Antoni Ribas; Matthew D Hellmann; Nir Hacohen; Alessandro Sette; James R Heath; Nina Bhardwaj; Fred Ramsdell; Robert D Schreiber; Ton N Schumacher; Pia Kvistborg; Nadine A Defranoux
Journal:  Cell       Date:  2020-10-09       Impact factor: 41.582

Review 7.  Characterizing human odorant signals: insights from insect semiochemistry and in silico modelling.

Authors:  Ashish Radadiya; John A Pickett
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-04-20       Impact factor: 6.237

8.  Accurate prediction of personalized olfactory perception from large-scale chemoinformatic features.

Authors:  Hongyang Li; Bharat Panwar; Gilbert S Omenn; Yuanfang Guan
Journal:  Gigascience       Date:  2018-02-01       Impact factor: 6.524

9.  FlavorDB: a database of flavor molecules.

Authors:  Neelansh Garg; Apuroop Sethupathy; Rudraksh Tuwani; Rakhi Nk; Shubham Dokania; Arvind Iyer; Ayushi Gupta; Shubhra Agrawal; Navjot Singh; Shubham Shukla; Kriti Kathuria; Rahul Badhwar; Rakesh Kanji; Anupam Jain; Avneet Kaur; Rashmi Nagpal; Ganesh Bagler
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

10.  Agonists of G-Protein-Coupled Odorant Receptors Are Predicted from Chemical Features.

Authors:  C Bushdid; C A de March; S Fiorucci; H Matsunami; J Golebiowski
Journal:  J Phys Chem Lett       Date:  2018-04-17       Impact factor: 6.475

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