| Literature DB >> 33859569 |
Qian-Chen Wang1, Zhen-Yu Wang2, Qian Xu3, Ruo-Bing Li1, Guo-Gang Zhang1, Rui-Zheng Shi1.
Abstract
OBJECTIVES: Epicardial adipose tissue (EAT) is closely adjacent to the coronary arteries and myocardium, its role as an endocrine organ to affect the pathophysiological processes of the coronary arteries and myocardium has been increasingly recognized. However, the specific gene expression profiles of EAT in coronary artery disease (CAD) has not been well characterized. Our aim was to investigate the role of EAT in CAD at the gene level.Entities:
Keywords: bioinformatics analysis; coronary artery disease; epicardial adipose tissue; gene expression profiles; mRNA
Year: 2021 PMID: 33859569 PMCID: PMC8042318 DOI: 10.3389/fphys.2021.605811
Source DB: PubMed Journal: Front Physiol ISSN: 1664-042X Impact factor: 4.566
Patient characteristics.
| CTRL ( | CAD ( | ||
| Age (years) | 56.0 ± 8.0 | 58.8 ± 7.0 | 0.392 |
| Sex, male (%) | 6 (54.5) | 5 (45.5) | 0.748 |
| BMI (Kg/m2) | 22.5 ± 2.4 | 23.8 ± 2.1 | 0.197 |
| AC (cm) | 86.1 ± 10.3 | 87.2 ± 6.6 | 0.779 |
| Diabetes mellitus (%) | 0 (0.0) | 0 (0.0) | 1.000 |
| Hypertension (%) | 3 (27.2) | 5 (45.5) | 0.478 |
| 1-Vessel disease | 0 (0.0) | 1 (9.1) | |
| 2-Vessel disease | 0 (0.0) | 4 (36.4) | |
| 3-Vessel disease | 0 (0.0) | 6 (54.5) | |
| Gensini score | 3.6 ± 1.4 | 88.4 ± 43.7 | <0.001 |
| WBC (×109/L) | 5.9 ± 2.7 | 6.5 ± 1.4 | 0.513 |
| TG (mmol/L) | 1.6 (0.6–2.6) | 1.6 (1.2–2.0) | 0.997 |
| TC (mmol/L) | 4.2 ± 0.8 | 4.6 ± 1.7 | 0.411 |
| LDL-c (mmol/L) | 2.6 ± 0.5 | 2.9 ± 1.3 | 0.472 |
| EF (%) | 55.6 ± 9.9 | 58.0 ± 12.6 | 0.636 |
FIGURE 1Comparison of EAT in histology. (A) H&E staining of epicardial adipose tissue (EAT) in the control and coronary artery disease (CAD) groups (100× magnification). Numbers 1–3 were EAT samples of three control subjects, while numbers 4–6 were EAT samples of three CAD patients. (B) The mean adipocyte size was larger in CAD group (***p < 0.001). (C) Expression levels of uncoupling protein 1 (UCP1) in the CTRL and CAD group (ns, p > 0.05).
FIGURE 2Differentially expressed genes and KEGG pathway enrichment analysis. (A) Volcano map of differentially expressed genes, red spots represent up-regulated genes and blue spots represent down-regulated genes. (B) KEGG pathways significantly associated with the upregulated genes.
The significant GO enriched analysis of differentially expressed genes in CAD.
| Category | Term | Count | Genes | |
| GO_BP | GO:0008544 | 11 | 0.000000129 | |
| Epidermis development | ||||
| GO:0007010 | 13 | 0.00000145 | ||
| Cytoskeleton organization | ||||
| GO:0006874 | 8 | 0.0000854 | ||
| Cellular calcium ion homeostasis | ||||
| GO:0070098 | 7 | 0.001093 | ||
| Chemokine-mediated signaling pathway | ||||
| GO:0006935 | 8 | 0.004041 | ||
| Chemotaxis | ||||
| GO:0030593 | 6 | 0.004568 | ||
| Neutrophil chemotaxis | ||||
| GO:0008202 | 5 | 0.005327 | ||
| Steroid metabolic process | ||||
| GO:0048247 | 4 | 0.010621 | ||
| Lymphocyte chemotaxis | ||||
| GO_CC | GO:0005615 | 52 | 1.95E-08 | |
| Extracellular space | ||||
| GO:0005576 | 50 | 0.00000209 | ||
| Extracellular region | ||||
| GO:0005882 | 9 | 0.0000576 | ||
| Intermediate filament | ||||
| GO:0005886 | 88 | 0.00618 | ||
| Plasma membrane | ||||
| GO:0045095 | 6 | 0.025111 | ||
| Keratin filament | ||||
| GO:0005887 | 34 | 0.028064 | ||
| Integral component of plasma membrane | ||||
| GO:0005578 | 10 | 0.034652 | ||
| Proteinaceous extracellular matrix | ||||
| GO:0016021 | 100 | 0.045498 | ||
| Integral component of membrane | ||||
| GO_MF | GO:0005200 | 9 | 0.000397 | |
| Structural constituent of cytoskeleton | ||||
| GO:0005198 | 13 | 0.000673 | ||
| Structural molecule activity | ||||
| GO:0008009 | 5 | 0.007812 | ||
| Chemokine activity | ||||
| GO:0005544 | 5 | 0.01399 | ||
| Calcium-dependent phospholipid binding | ||||
| GO:0005509 | 20 | 0.022734 | ||
| Calcium ion binding | ||||
| GO:0005125 | 8 | 0.023818 | ||
| Cytokine activity | ||||
| GO:0005328 | 3 | 0.033172 | ||
| Neurotransmitter: sodium symporter activity |
FIGURE 3Analysis of protein-protein interaction (PPI) network of CAD-related differentially expressed genes (DEGs) in EAT. (A) Edges represented protein-protein associations which were meant to be specific and meaningful. The colored nodes (red, green, pink, and yellow) represented the top four modules in the PPI network. (B) Top 10 hub genes identified by CytoHubba in Cytoscape.
FIGURE 4Real-time quantitative PCR (RT-qPCR) verification of 10 hub genes in EAT of CAD. (A) GNG3 expression was significantly increased in the CAD group. (B) MCHR1 expression was significantly higher in the CAD group. (C) BDKRB1 expression was greater in the CAD group. (D) MCHR2 was increased in the CAD group, although the difference was not statistically significant. (E) CXCL8 expression was not statistically different between the two groups. (F) CXCR5 expression was higher in the CAD group, although the difference was not statistically significant. (G) CCR8 expression was significantly higher in the CAD group. (H) CCL4L1 expression was not different in the two groups. (I) TAS2R10 expression was increased in the CAD group, although the difference was not statistically significant. (J) TAS2R41 expression was significantly increased in EAT of CAD. *p < 0.05, **p < 0.01. In each column, error bars show the mean and standard deviation per group.