Literature DB >> 33859219

Soil CO2 emission and soil attributes associated with the microbiota of a sugarcane area in southern Brazil.

Mara Regina Moitinho1,2, Daniel De Bortoli Teixeira3, Elton da Silva Bicalho4, Alan Rodrigo Panosso4, Antonio Sergio Ferraudo4, Gener Tadeu Pereira4, Siu Mui Tsai5, Beatriz Maria Ferrari Borges5, Newton La Scala4.   

Abstract

The spaticlass="Chemical">al structure of soil class="Chemical">n class="Chemical">CO2 emission (FCO2) and soil attributes are affected by different factors in a highly complex way. In this context, this study aimed to characterize the spatial variability patterns of FCO2 and soil physical, chemical, and microbiological attributes in a sugarcane field area after reform activities. The study was conducted in an Oxisol with the measurement of FCO2, soil temperature (Ts), and soil moisture (Ms) in a regular 90 × 90-m grid with 100 sampling points. Soil samples were collected at each sampling point at a depth of 0-0.20 m to determine soil physical (density, macroporosity, and microporosity), particle size (sand, silt, and clay), and chemical attributes (soil organic matter, pH, P, K, Ca, Mg, Al, H + Al, cation exchange capacity, and base saturation). Geostatistical analyses were performed to assess the spatial variability and map soil attributes. Two regions (R1 and R2) with contrasting emission values were identified after mapping FCO2. The abundance of bacterial 16S rRNA, pmoA, and nifH genes, determined by real-time quantitative PCR (qPCR), enzymatic activity (dehydrogenase, urease, cellulase, and amylase), and microbial biomass carbon were determined in R1 and R2. The mean values of FCO2 (2.91 µmol m-2 s-1), Ts (22.6 °C), and Ms (16.9%) over the 28-day period were similar to those observed in studies also conducted under Oxisols in sugarcane areas and conventional soil tillage. The spatial pattern of FCO2 was similar to that of macropores, air-filled pore space, silt content, soil organic matter, and soil carbon decay constant. No significant difference was observed between R1 and R2 for the copy number of bacterial 16S rRNA and nifH genes, but the results of qPCR for the pmoA gene presented differences (p < 0.01) between regions. The region R1, with the highest FCO2 (2.9 to 4.2 µmol m-2 s-1), showed higher enzymatic activity of dehydrogenase (33.02 µg TPF g-1 dry soil 24 h-1), urease (41.15 µg NH4-N g-1 dry soil 3 h-1), amylase (73.84 µg glucose g-1 dry soil 24 h-1), and microbial biomass carbon (41.35 µg C g-1 soil) than R2, which had the lowest emission (1.9 to 2.7 µmol m-2 s-1). In addition, the soil C/N ratio was higher in R2 (15.43) than in R1 (12.18). The spatial pattern of FCO2 in R1 and R2 may not be directly related to the total amount of the microbial community (bacterial 16S rRNA) in the soil but to the specific function that these microorganisms play regarding soil carbon degradation (pmoA).

Entities:  

Year:  2021        PMID: 33859219     DOI: 10.1038/s41598-021-87479-2

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  10 in total

1.  Soil bacterial and fungal communities across a pH gradient in an arable soil.

Authors:  Johannes Rousk; Erland Bååth; Philip C Brookes; Christian L Lauber; Catherine Lozupone; J Gregory Caporaso; Rob Knight; Noah Fierer
Journal:  ISME J       Date:  2010-05-06       Impact factor: 10.302

2.  PCR-based community structure studies of bacteria associated with eukaryotic organisms: a simple PCR strategy to avoid co-amplification of eukaryotic DNA.

Authors:  Ingrid Bakke; Peter De Schryver; Nico Boon; Olav Vadstein
Journal:  J Microbiol Methods       Date:  2010-12-21       Impact factor: 2.363

3.  Ultra-fast high-resolution agarose electrophoresis of DNA and RNA using low-molarity conductive media.

Authors:  Jonathan R Brody; Eric S Calhoun; Eike Gallmeier; Talisa D Creavalle; Scott E Kern
Journal:  Biotechniques       Date:  2004-10       Impact factor: 1.993

4.  Tillage erosion and its effect on soil properties and crop yield in Denmark.

Authors:  G Heckrath; J Djurhuus; T A Quine; K Van Oost; G Govers; Y Zhang
Journal:  J Environ Qual       Date:  2005 Jan-Feb       Impact factor: 2.751

5.  Different atmospheric methane-oxidizing communities in European beech and Norway spruce soils.

Authors:  Daniela M Degelmann; Werner Borken; Harold L Drake; Steffen Kolb
Journal:  Appl Environ Microbiol       Date:  2010-03-26       Impact factor: 4.792

6.  pmoA Primers for detection of anaerobic methanotrophs.

Authors:  Francisca A Luesken; Baoli Zhu; Theo A van Alen; Margaret K Butler; Marina Rodriguez Diaz; Bongkeun Song; Huub J M Op den Camp; Mike S M Jetten; Katharina F Ettwig
Journal:  Appl Environ Microbiol       Date:  2011-04-01       Impact factor: 4.792

7.  Spatial and temporal variations in soil respiration in relation to stand structure and soil parameters in an unmanaged beech forest.

Authors:  Astrid R B Søe; Nina Buchmann
Journal:  Tree Physiol       Date:  2005-11       Impact factor: 4.196

8.  Identifying qualitative effects of different grazing types on below-ground communities and function in a long-term field experiment.

Authors:  Catriona A Macdonald; Michael J Crawley; Denis J Wright; Justin Kuczynski; Lucinda Robinson; Rob Knight; Waleed Abu Al-Soud; Søren J Sørensen; Ye Deng; Jizhong Zhou; Brajesh K Singh
Journal:  Environ Microbiol       Date:  2014-07-23       Impact factor: 5.491

9.  Bacterial indicator taxa in soils under different long-term agricultural management.

Authors:  N G Jiménez-Bueno; C Valenzuela-Encinas; R Marsch; D Ortiz-Gutiérrez; N Verhulst; B Govaerts; L Dendooven; Y E Navarro-Noya
Journal:  J Appl Microbiol       Date:  2016-03-07       Impact factor: 3.772

10.  Nitrogen fertilizer dose alters fungal communities in sugarcane soil and rhizosphere.

Authors:  Chanyarat Paungfoo-Lonhienne; Yun Kit Yeoh; Naga Rup Pinaki Kasinadhuni; Thierry G A Lonhienne; Nicole Robinson; Philip Hugenholtz; Mark A Ragan; Susanne Schmidt
Journal:  Sci Rep       Date:  2015-03-02       Impact factor: 4.379

  10 in total

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