Literature DB >> 21460105

pmoA Primers for detection of anaerobic methanotrophs.

Francisca A Luesken1, Baoli Zhu, Theo A van Alen, Margaret K Butler, Marina Rodriguez Diaz, Bongkeun Song, Huub J M Op den Camp, Mike S M Jetten, Katharina F Ettwig.   

Abstract

Published pmoA primers do not match the pmoA sequence of "Candidatus Methylomirabilis oxyfera," a bacterium that performs nitrite-dependent anaerobic methane oxidation. Therefore, new pmoA primers for the detection of "Ca. Methylomirabilis oxyfera"-like methanotrophs were developed and successfully tested on freshwater samples from different habitats. These primers expand existing molecular tools for the study of methanotrophs in the environment.

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Year:  2011        PMID： 21460105      PMCID： PMC3127593          DOI： 10.1128/AEM.02960-10

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  23 in total

1.  A microbial consortium couples anaerobic methane oxidation to denitrification.

Authors:  Ashna A Raghoebarsing; Arjan Pol; Katinka T van de Pas-Schoonen; Alfons J P Smolders; Katharina F Ettwig; W Irene C Rijpstra; Stefan Schouten; Jaap S Sinninghe Damsté; Huub J M Op den Camp; Mike S M Jetten; Marc Strous
Journal:  Nature       Date:  2006-04-13       Impact factor: 49.962

2.  Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia.

Authors:  Huub J M Op den Camp; Tajul Islam; Matthew B Stott; Harry R Harhangi; Alexander Hynes; Stefan Schouten; Mike S M Jetten; Nils-Kåre Birkeland; Arjan Pol; Peter F Dunfield
Journal:  Environ Microbiol Rep       Date:  2009-03-03       Impact factor: 3.541

3.  Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionarily related.

Authors:  A J Holmes; A Costello; M E Lidstrom; J C Murrell
Journal:  FEMS Microbiol Lett       Date:  1995-10-15       Impact factor: 2.742

Review 4.  Methanotrophic bacteria.

Authors:  R S Hanson; T E Hanson
Journal:  Microbiol Rev       Date:  1996-06

5.  Cohn's Crenothrix is a filamentous methane oxidizer with an unusual methane monooxygenase.

Authors:  Kilian Stoecker; Bernd Bendinger; Björn Schöning; Per H Nielsen; Jeppe L Nielsen; Christian Baranyi; Elena R Toenshoff; Holger Daims; Michael Wagner
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-01       Impact factor: 11.205

6.  Quantitative detection of methanotrophs in soil by novel pmoA-targeted real-time PCR assays.

Authors:  Steffen Kolb; Claudia Knief; Stephan Stubner; Ralf Conrad
Journal:  Appl Environ Microbiol       Date:  2003-05       Impact factor: 4.792

7.  Microbial characterization of nitrification in a shallow, nitrogen-contaminated aquifer, Cape Cod, Massachusetts and detection of a novel cluster associated with nitrifying Betaproteobacteria.

Authors:  Daniel N Miller; Richard L Smith
Journal:  J Contam Hydrol       Date:  2008-11-05       Impact factor: 3.188

8.  In situ measurement of methane oxidation in groundwater by using natural-gradient tracer tests.

Authors:  R L Smith; B L Howes; S P Garabedian
Journal:  Appl Environ Microbiol       Date:  1991-07       Impact factor: 4.792

9.  Methanogen community in Zoige wetland of Tibetan plateau and phenotypic characterization of a dominant uncultured methanogen cluster ZC-I.

Authors:  Guishan Zhang; Jianqing Tian; Na Jiang; Xiaopeng Guo; Yanfen Wang; Xiuzhu Dong
Journal:  Environ Microbiol       Date:  2008-03-28       Impact factor: 5.491

10.  A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs.

Authors:  Patricia L Tavormina; Victoria J Orphan; Marina G Kalyuzhnaya; Mike S M Jetten; Martin G Klotz
Journal:  Environ Microbiol Rep       Date:  2011-02       Impact factor: 3.541
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  37 in total

1.  Co-existence of Anaerobic Ammonium Oxidation Bacteria and Denitrifying Anaerobic Methane Oxidation Bacteria in Sewage Sludge: Community Diversity and Seasonal Dynamics.

Authors:  Sai Xu; Wenjing Lu; Muhammad Farooq Mustafa; Luis Miguel Caicedo; Hanwen Guo; Xindi Fu; Hongtao Wang
Journal:  Microb Ecol       Date:  2017-06-20       Impact factor: 4.552

2.  Anaerobic methane oxidation coupled to denitrification is the dominant methane sink in a deep lake.

Authors:  Joerg S Deutzmann; Peter Stief; Josephin Brandes; Bernhard Schink
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-03       Impact factor: 11.205

3.  A New Primer to Amplify pmoA Gene From NC10 Bacteria in the Sediments of Dongchang Lake and Dongping Lake.

Authors:  Shenghui Wang; Yanjun Liu; Guofu Liu; Yaru Huang; Yu Zhou
Journal:  Curr Microbiol       Date:  2017-05-13       Impact factor: 2.188

4.  Faunal Burrows Alter the Diversity, Abundance, and Structure of AOA, AOB, Anammox and n-Damo Communities in Coastal Mangrove Sediments.

Authors:  Jing Chen; Ji-Dong Gu
Journal:  Microb Ecol       Date:  2017-01-28       Impact factor: 4.552

5.  Revisiting methanotrophic communities in sewage treatment plants.

Authors:  Adrian Ho; Siegfried E Vlaeminck; Katharina F Ettwig; Bellinda Schneider; Peter Frenzel; Nico Boon
Journal:  Appl Environ Microbiol       Date:  2013-02-15       Impact factor: 4.792

6.  Evidence for nitrite-dependent anaerobic methane oxidation as a previously overlooked microbial methane sink in wetlands.

Authors:  Bao-lan Hu; Li-dong Shen; Xu Lian; Qun Zhu; Shuai Liu; Qian Huang; Zhan-fei He; Sha Geng; Dong-qing Cheng; Li-ping Lou; Xiang-yang Xu; Ping Zheng; Yun-feng He
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-10       Impact factor: 11.205

7.  Key Physiology of a Nitrite-Dependent Methane-Oxidizing Enrichment Culture.

Authors:  Simon Guerrero-Cruz; Karin Stultiens; Maartje A H J van Kessel; Wouter Versantvoort; Mike S M Jetten; Huub J M Op den Camp; Boran Kartal
Journal:  Appl Environ Microbiol       Date:  2019-04-04       Impact factor: 4.792

8.  Simultaneous nitrite-dependent anaerobic methane and ammonium oxidation processes.

Authors:  Francisca A Luesken; Jaime Sánchez; Theo A van Alen; Janeth Sanabria; Huub J M Op den Camp; Mike S M Jetten; Boran Kartal
Journal:  Appl Environ Microbiol       Date:  2011-08-12       Impact factor: 4.792

9.  Rare branched fatty acids characterize the lipid composition of the intra-aerobic methane oxidizer "Candidatus Methylomirabilis oxyfera".

Authors:  Dorien M Kool; Baoli Zhu; W Irene C Rijpstra; Mike S M Jetten; Katharina F Ettwig; Jaap S Sinninghe Damsté
Journal:  Appl Environ Microbiol       Date:  2012-10-05       Impact factor: 4.792

10.  Anaerobic oxidization of methane in a minerotrophic peatland: enrichment of nitrite-dependent methane-oxidizing bacteria.

Authors:  Baoli Zhu; Gijs van Dijk; Christian Fritz; Alfons J P Smolders; Arjan Pol; Mike S M Jetten; Katharina F Ettwig
Journal:  Appl Environ Microbiol       Date:  2012-10-05       Impact factor: 4.792
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