Literature DB >> 33844136

Artificial intelligence to deep learning: machine intelligence approach for drug discovery.

Rohan Gupta1, Devesh Srivastava1, Mehar Sahu1, Swati Tiwari1, Rashmi K Ambasta1, Pravir Kumar2.   

Abstract

Drug designing and development is an important area of research for pharmaceutical companies and chemical scientists. However, low efficacy, off-target delivery, time consumption, and high cost impose a hurdle and challenges that impact drug design and discovery. Further, complex and big data from genomics, proteomics, microarray data, and clinical trials also impose an obstacle in the drug discovery pipeline. Artificial intelligence and machine learning technology play a crucial role in drug discovery and development. In other words, artificial neural networks and deep learning algorithms have modernized the area. Machine learning and deep learning algorithms have been implemented in several drug discovery processes such as peptide synthesis, structure-based virtual screening, ligand-based virtual screening, toxicity prediction, drug monitoring and release, pharmacophore modeling, quantitative structure-activity relationship, drug repositioning, polypharmacology, and physiochemical activity. Evidence from the past strengthens the implementation of artificial intelligence and deep learning in this field. Moreover, novel data mining, curation, and management techniques provided critical support to recently developed modeling algorithms. In summary, artificial intelligence and deep learning advancements provide an excellent opportunity for rational drug design and discovery process, which will eventually impact mankind. The primary concern associated with drug design and development is time consumption and production cost. Further, inefficiency, inaccurate target delivery, and inappropriate dosage are other hurdles that inhibit the process of drug delivery and development. With advancements in technology, computer-aided drug design integrating artificial intelligence algorithms can eliminate the challenges and hurdles of traditional drug design and development. Artificial intelligence is referred to as superset comprising machine learning, whereas machine learning comprises supervised learning, unsupervised learning, and reinforcement learning. Further, deep learning, a subset of machine learning, has been extensively implemented in drug design and development. The artificial neural network, deep neural network, support vector machines, classification and regression, generative adversarial networks, symbolic learning, and meta-learning are examples of the algorithms applied to the drug design and discovery process. Artificial intelligence has been applied to different areas of drug design and development process, such as from peptide synthesis to molecule design, virtual screening to molecular docking, quantitative structure-activity relationship to drug repositioning, protein misfolding to protein-protein interactions, and molecular pathway identification to polypharmacology. Artificial intelligence principles have been applied to the classification of active and inactive, monitoring drug release, pre-clinical and clinical development, primary and secondary drug screening, biomarker development, pharmaceutical manufacturing, bioactivity identification and physiochemical properties, prediction of toxicity, and identification of mode of action.
© 2021. The Author(s), under exclusive licence to Springer Nature Switzerland AG.

Entities:  

Keywords:  Artificial intelligence; Artificial neural networks; Computer-aided drug design; Deep learning; Drug design and discovery; Drug repurposing; Machine learning; Quantitative structure–activity relationship; Virtual screening

Mesh:

Year:  2021        PMID: 33844136      PMCID: PMC8040371          DOI: 10.1007/s11030-021-10217-3

Source DB:  PubMed          Journal:  Mol Divers        ISSN: 1381-1991            Impact factor:   3.364


  336 in total

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Review 2.  Deep learning in neural networks: an overview.

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Journal:  Neural Netw       Date:  2014-10-13

Review 3.  The significance of artificial intelligence in drug delivery system design.

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4.  Artificial Intelligence in Drug Design-The Storm Before the Calm?

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Review 5.  What is precise pathophysiology in development of hypertension in pregnancy? Precision medicine requires precise physiology and pathophysiology.

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Journal:  Drug Discov Today       Date:  2017-10-31       Impact factor: 7.851

6.  Artificial intelligence in chemistry and drug design.

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Journal:  Metabolism       Date:  2017-01-11       Impact factor: 8.694

8.  Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.

Authors:  Lulin Huang; Yuhong Chen; Ying Lin; Pancy O S Tam; Yilian Cheng; Yi Shi; Bo Gong; Fang Lu; Jialiang Yang; Haixin Wang; Yi Yin; Yong Cao; Dan Jiang; Ling Zhong; Bai Xue; Jing Wang; Fang Hao; Dean-Yao Lee; Chi-Pui Pang; Xinghuai Sun; Zhenglin Yang
Journal:  Sci China Life Sci       Date:  2018-12-24       Impact factor: 6.038

9.  An Introduction to Machine Learning.

Authors:  Solveig Badillo; Balazs Banfai; Fabian Birzele; Iakov I Davydov; Lucy Hutchinson; Tony Kam-Thong; Juliane Siebourg-Polster; Bernhard Steiert; Jitao David Zhang
Journal:  Clin Pharmacol Ther       Date:  2020-03-03       Impact factor: 6.875

Review 10.  Advances and Perspectives in Applying Deep Learning for Drug Design and Discovery.

Authors:  Celio F Lipinski; Vinicius G Maltarollo; Patricia R Oliveira; Alberico B F da Silva; Kathia Maria Honorio
Journal:  Front Robot AI       Date:  2019-11-05
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  31 in total

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5.  A multilevel approach for screening natural compounds as an antiviral agent for COVID-19.

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Review 6.  Transcriptional Profiling of Pseudomonas aeruginosa Infections.

Authors:  Janne G Thöming; Susanne Häussler
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 3.650

7.  Big data and artificial intelligence (AI) methodologies for computer-aided drug design (CADD).

Authors:  Jai Woo Lee; Miguel A Maria-Solano; Thi Ngoc Lan Vu; Sanghee Yoon; Sun Choi
Journal:  Biochem Soc Trans       Date:  2022-02-28       Impact factor: 4.919

8.  Human and Machine Intelligence Together Drive Drug Repurposing in Rare Diseases.

Authors:  Anup P Challa; Nicole M Zaleski; Rebecca N Jerome; Robert R Lavieri; Jana K Shirey-Rice; April Barnado; Christopher J Lindsell; David M Aronoff; Leslie J Crofford; Raymond C Harris; T Alp Ikizler; Ingrid A Mayer; Kenneth J Holroyd; Jill M Pulley
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Review 9.  Enhancing Clinical Translation of Cancer Using Nanoinformatics.

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10.  Prediction of African Swine Fever Virus Inhibitors by Molecular Docking-Driven Machine Learning Models.

Authors:  Jiwon Choi; Jun Seop Yun; Hyeeun Song; Yong-Keol Shin; Young-Hoon Kang; Palinda Ruvan Munashingha; Jeongyeon Yoon; Nam Hee Kim; Hyun Sil Kim; Jong In Yook; Dongseob Tark; Yun-Sook Lim; Soon B Hwang
Journal:  Molecules       Date:  2021-06-11       Impact factor: 4.411

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