Sergio Antônio de Souza Farias1, Kauê Santana da Costa2, João B L Martins3. 1. Laboratory of Molecular Modeling, Institute of Educational Sciences, Federal University of Western Pará, 68040-255 Santarém, Pará, Brazil. 2. Institute of Biodiversity, Federal University of Western Pará, 68040-255 Santarém, Pará, Brazil. 3. Laboratory of Computational Chemistry, Institute of Chemistry, University of Brasilia, 4478 Brasília, Distrito Federal, Brazil.
Abstract
Understanding the antioxidant activity of flavonoids is important to investigate their biological activities as well as to design novel molecules with low toxicity and high activity. Aromaticity is a chemical property found in cyclic structures that plays an important role in their stability and reactivity, and its investigation can help us to understand the antioxidant activity of some heterocyclic compounds. In the present study, we applied the density functional theory (DFT) to investigate the properties of seven flavonoid structures with well-reported antioxidant activity: flavan, anthocyanidin, flavanone, flavonol, isoflavone, flavone, and flavan-3-ol. Conformational, structural, magnetic, and electronic analyses were performed using nuclear magnetic resonance, ionization potentials, electron affinity, bond dissociation energy, proton affinity, frontier molecular orbitals (highest occupied molecular orbital (HOMO)/lowest unoccupied molecular orbital (LUMO)), and aromaticity through nucleus-independent chemical shifts to analyze these seven flavonoid structures. We revised the influence of hydroxyl groups on the properties of flavonoids and also investigated the influence of the aromaticity of these seven flavonoids on the antioxidant activity.
Understanding the antioxidant activity of flavonoids is important to investigate their biological activities as well as to design novel molecules with low toxicity and high activity. Aromaticity is a chemical property found in cyclic structures that plays an important role in their stability and reactivity, and its investigation can help us to understand the antioxidant activity of some heterocyclic compounds. In the present study, we applied the density functional theory (DFT) to investigate the properties of seven flavonoid structures with well-reported antioxidant activity: flavan, anthocyanidin, flavanone, flavonol, isoflavone, flavone, and flavan-3-ol. Conformational, structural, magnetic, and electronic analyses were performed using nuclear magnetic resonance, ionization potentials, electron affinity, bond dissociation energy, proton affinity, frontier molecular orbitals (highest occupied molecular orbital (HOMO)/lowest unoccupied molecular orbital (LUMO)), and aromaticity through nucleus-independent chemical shifts to analyze these seven flavonoid structures. We revised the influence of hydroxyl groups on the properties of flavonoids and also investigated the influence of the aromaticity of these seven flavonoids on the antioxidant activity.
Flavonoids are a class
of natural compounds characterized by a
backbone containing 15 carbon atoms, two phenyl rings A and B linked
by heterocyclic (pyran) ring C (Figure ).[1] Benzo-γ-pyran
(chromone) refers to the heterocycle formed by the phenyl ring (A)
and the pyran ring (C).[2] Flavonoids are
divided into six subclasses: anthocyanidins, flavanones, flavonols,
isoflavones, flavone, and flavan-3-ol.[3−5]
Figure 1
Molecular structures
of the investigated flavonoids showing the
atoms and ring labels, as well as the studied dihedral angles. (A)
Flavan, (B) anthocyanidin, (C) flavanone, (D) flavonol, (E) isoflavone,
(F) flavone, and (G) flavan-3-ol.
Molecular structures
of the investigated flavonoids showing the
atoms and ring labels, as well as the studied dihedral angles. (A)
Flavan, (B) anthocyanidin, (C) flavanone, (D) flavonol, (E) isoflavone,
(F) flavone, and (G) flavan-3-ol.Flavonoids possess a wide range of biological activities, such
as anti-inflammatory,[6] antibacterial,[7] anticancer,[8,9] and antiviral.[10,11] Different computational studies have investigated the structural
properties of these molecules related to their biological activities,
especially theirantioxidant activity; however, the influence of the
aromaticity for their reactivity remains unknown.[12−19] The antioxidant property is related to the ability to neutralize
free radicals that are involved with the oxidative stress in the cell.[20,21] Free radicals, such as reactive oxygen species, cause serious damages
to cell structures, such as lipids, proteins, and nucleic acids, and
they are involved in food deterioration and the development of several
human diseases.[22] Flavonoids are phenolic
compounds with proven antioxidant activity that prevent the action
of free radicals, thus protecting the cell against their harmful effects.Investigating the antioxidant activity through electronic properties
is important to design novel antioxidant molecules with low toxicity
and high activity.[23,24] Three major mechanisms have been
proposed to explain the antioxidant activity of compounds.[25−27] It has been proposed that flavonoids (FlavOH) can neutralize the
free radical by donating a hydrogen atom (eq ).[28−30]Another mechanism consists of
the electron
transfer, where the antioxidant can donate an electron to the free
radical (eqs and 3).The second mechanism (2) is known as hydrogen atom transfer (HAT), which occurs in
(3) single-electron transfer followed by proton
transfer
(SET-PT). The third mechanism is known as sequential proton loss electron
transfer (SPLET), which consists of the following mechanism (eqs and5)where occurs the
transference of a proton
from the antioxidant (4) followed by electron
donation. The parameters applied to evaluate the antioxidant activity
in the mechanisms of HAT, SET-PT, and SPLET include the calculation
of molecular properties, such as bond dissociation enthalpy (BDE),
ionization potential (IP), and proton affinity (PA), respectively.[31] Besides these mechanisms, the free radicals
that emerge in both reactions (FlavO* and FlavOH*+) must
be neutralized to avoid oxidative stress.[28]The aromaticity of cyclic structures is a key parameter for
their
reactivity.[32,33] Aromatic rings show diamagnetism
and increase the stability of the structures. In contrast, antiaromatic
rings show paramagnetism and less stability. The aromaticity can be
addressed through chemical shielding in 1H nuclear magnetic
resonance (NMR) spectra.[34,35] Moreover, the antioxidant
activity of compounds can be mapped by the frontier molecular orbitals
(highest occupied molecular orbital (HOMO)/lowest unoccupied molecular
orbital (LUMO)) and ionization potential.[36]In the present study, we performed a systematic analysis of
seven
flavonoid structures—flavan, anthocyanidin, flavanone, flavonol,
isoflavone, flavone, and flavan-3-ol—using structural, conformational,
and electronic analyses of protonated (neutral) and deprotonated forms.
We compared the conformational properties of these structures with
previous theoretical studies, analyzing the lower energy conformations,
especially the electron density of the benzo-γ-pyran ring and
the influence of the hydroxyl and ketone groups and aromatic rings
on theirantioxidant activity.
Results and Discussion
Different computational approaches have been used to investigate
flavonoid structures.[3,31,37,38] Recently, Zheng et al. performed a comparative
study focusing on the interactions of the hydrogens in the solvated
systems of 5,7-dihydroxy-2-(3,4-dihydroxyphenyl)-chrome-4-one (luteolin)
using DFT (B3LYP method) and concluded that luteolin presents a nonplanar
conformation.[37] Similarly, Matteini et
al. performed a theoretical study with the flavonoid rutin, using
molecular mechanics (MM) and semiempirical calculations using Austin
Model 1 (AM1), and they found 16 stable conformations with overall
minimum energy due to the formation of intermolecular H-bond interactions
between the hydroxyl group and C12 attached to ring B.[38] Herein, we optimized the geometries of the seven
flavonoid structures using the CAM-B3LYP/def2TZV calculations (Figure ). The atoms were
numbered according to the flavonoid scaffold (see Figure ).
Figure 2
Optimized conformations
of the investigated flavonoid structures.
(A) Flavan, (B) anthocyanidin, (C) flavanone, (D) flavonol, (E) isoflavone,
(F) flavone, and (G) flavan-3-ol.
Optimized conformations
of the investigated flavonoid structures.
(A) Flavan, (B) anthocyanidin, (C) flavanone, (D) flavonol, (E) isoflavone,
(F) flavone, and (G) flavan-3-ol.The dipole moments (Debye), interatomic distances, and dihedrals
angles for the neutrals and deprotonated structures optimized with
CAM-B3LYP/def2TZV are shown in Table . The largest dipole moments were found for the flavonol
and flavone structures, while anthocyanidin showed the smallest dipole
moment. Table shows
the dihedral angles τ: O1–C2–C1′–C6′,
ω: C9–O1–C2–C3, and ϕ: C10–C4–C3–C2.
Table 1
Dipole Moments (Debye), Interatomic
Distances between the Carbons (Å), and Torsion Angles (Degrees)
of the Optimized Structures of Flavonoids at the CAM-B3LYP/def2TZV
Level
dipole
C1′–C2′
C1′–C6′
C1′–C2
C2–C3
O1–HC6′
τ
ω
ϕ
luteolin[37]
1.41
1.40
1.47
1.35
–160.7
–0.05
–1.50
experimental
1.38
1.42
1.46
1.36c
19.00
55.30c
36.30c
1.40b
1.40b
1.47b
1.36b
–164.6c
–178.4d
0.00d
0.00d
flavan
1.83
1.40
1.40
1.51
1.53
2.46
–147.17
–44.03
–47.84
anthocyanidin
3.44
1.41
1.41
1.45
1.39
2.46
171.21
0.21
1.36
anthocyanidind
5.44
–178.79
–0.01
–0.57
flavanone
2.61
1.40
1.40
1.50
1.53
2.50
144.44
51.21
33.11
flavonol
3.58
1.40
1.40
1.48
1.34
2.32
169.08
0.11
1.56
flavonola
8.52
179.00
–0.19
–0.42
isoflavone
3.03
1.40
1.40
1.34
–177.93
–0.23
–2.46
flavone
4.42
1.40
1.40
1.47
1.35
2.40
157.75
0.28
1.6
flavan-3-ol
1.92
1.39
1.39
1.50
1.53
2.50
147.13
52.43
46.12
flavan-3-ola
116.44
33.96
57.11
Deprotonated structures;
all values
were obtained from the reference structures luteolin.[39]
Quercetin.[40]
Flavanone
derivatives.[41]
Flavone derivatives.[42]
Deprotonated structures;
all values
were obtained from the reference structures luteolin.[39]Quercetin.[40]Flavanone
derivatives.[41]Flavone derivatives.[42]The interatomic distances obtained
in the present study were compared
with the luteolin structure calculated at the B3LYP level.[37] We noted that there is no significant difference
between the calculated interatomic distances of the investigated structures
of flavonoids (Table ) with those previously investigated in the literature.[37]Lau et al., using B3LYP/6-31G(d) calculations,
suggested that the
planarities of 5,7-dihydroxyflavone and 7,8-dihydroxyflavone were
associated with the induced dipole interaction between O1 and the hydrogen of C6 (O1–HC6) with variations between 2.32
and 2.46 Å.[43] Similarly, Machado et
al., investigated flavonoids with a hydroxyl group in rings A and
C using B3LYP/6-31G(d,p), and they found the values of the torsion
angle τ between 0 and 20° and the distance values of O1–HC′
between 2.31 and 2.39 Å.[44] Aparicio
investigated 16 different flavonoid structures using B3LYP/6-311++G(d,p)
and associated the planarity of the molecules with the hydroxyl group
bonded to C3 that forms a hydrogen bond with C6′ in ring B.[3] Our analyses showed that the protonated structures
of anthocyanidin, flavonol, and flavone have a planar conformation
with distances of 2.31, 2.31, and 2.40 Å between the hydrogen
bonded to C6′ and O1, respectively. The distance between O3H
and C4 is 2.54 Å in anthocyanidin with a torsion angle τ
of 171.21°. Flavan-3-ol does show a great conformational change
in its structure with a distance of 2.00 Å between O3H and C3
and a torsion angle τ of 147.13°. Previous theoretical
and experimental studies obtained a torsion angle τ close to
180°.[38,39] However, the CAM-B3LYP calculations
showed a planar conformation only for the deprotonated anthocyanidin
and flavonol; the deprotonated flavan-3-ol showed no planarity between
rings B and C. Our computational analysis indicated that the anthocyanidin
structure did not show an interaction between hydroxyl and the hydrogen
bond to C6′ of ring B as confirmed previously.[3,44]The protonated forms of flavonol and anthocyanidin showed
planar
conformation with a C6′–O1 distance of 2.30 Å and
a O1–C6′–H angle of 60°. In contrast, flavan
and flavan-3-ol showed conformational changes with atomic distances
of C6′–O1 equal to 2.46 and 2.50 Å, respectively,
and angles of O1–C6′–H equal to 62.52 and 61.45°,
respectively. These results indicate that the stabilization of these
molecules is not due to the formation of a hydrogen bond between C6′
and O1.The deprotonation of anthocyanidin and flavonol did
not change
the planarity of their structures, which suggests that the hydroxyl
group has no influence on the stabilization of planar structures.
Machado et al.[44] indicated an interaction
between the oxygen of O3H and the ketone group of ring C that stabilizes
the planar conformation by the electronic redistribution through the
molecule. Comparing the results of anthocyanidin, flavonol, and flavan-3-ol
(Figure ), we found
an H-bond interaction between the hydroxyl group with ring C. Similar
to Machado et al., we also identified an interaction between the hydroxyl
group and the oxygen of the ketone group.[44]Figure shows the
relationships between the energy and conformational variations related
to the torsion angles τ of the protonated molecules. All conformational
analyzes were performed using the CAM-B3LYP/def2TZV protocol.
Figure 3
Conformational
analysis of the torsion angle τ of the investigated
flavonoids (in degrees). (A) Flavan, (B) flavanone, (C) isoflavone,
and (D) flavone.
Conformational
analysis of the torsion angle τ of the investigated
flavonoids (in degrees). (A) Flavan, (B) flavanone, (C) isoflavone,
and (D) flavone.Flavan and flavanone
showed almost the same pattern, with the maximum
energy found for torsion angles τ between 80 and 140°,
while isoflavone and flavone have the maximum energy at almost 150
and 130°. Table shows the bond distance values obtained using the CAM-B3LYP/def2TZV
protocol of the deprotonated flavonoid molecules.
Table 2
Interatomic Distances (Å) and
Angles (Degrees) of the Hydrogen Bond were Obtained from the Conformational
Analysis of the Flavonoid Structures
anthocyanidin
flavonol
flavan-3-ol
O3H···O
2.06
O2–H–O3
115
HO···HC4
2.66
2.58
HO···H (ring
B)
2.09
2.15
2.99
C4–O2–H
86.57
97.69
Cappelli et al. performed
a conformational analysis of flavonoids
analyzing the hydroxyl groups of all rings using molecular mechanics
and DFT in the gas phase and the methanol solution.[45] The simulations showed nine different conformations for
the investigated structures. In contrast, Machado et al.[44] did not find interactions between the hydroxyl
group and the carbons of ring C in the investigated conformations.
However, it is important to highlight that detailed analyses of the
electronic properties of the flavonoids will be necessary to corroborate
with the aforementioned suggestions.[44,45] We noted that
when the hydroxyl group interacts with the oxygen of the ketone group,
it leads to a decrease in the overall energy of flavonol with a dihedral
angle τ equal to 169.08°. Additionally, flavonol and anthocyanidin
tend to be planar (Table ).Figure shows the
conformational analysis of anthocyanidin (Figure A), flavonol (Figure B), and flavan-3-ol (Figure C). We noted a significant reduction in the
energy values of the flavonol conformation due to the alterations
of O3H orientation. The structures of the lowest-energy conformations
of anthocyanidin, flavonol, and flavan-3-ol are related to the positions
of the hydroxyl group interacting with the hydrogen of C4, as well
as the ketone group. The rotational barrier of flavanol is the highest
compared to anthocyanidin and flavan-3-ol, which corroborates the
previous findings.[3] Additionally, these
structures form a hydrogen bond interaction between the hydroxyl groups
of C3 (ring C) and O4 (ring C), as well as the hydroxyl group of C3
(ring C) and the hydrogen of C6′ (ring B).
Figure 4
Conformational analysis
of flavonoid structures on torsion angle
τ (in degrees) and their respective high-energy and low-energy
conformational states. (A, B) Flavonol, (C, D) flavan-3-ol, and (E,
F) anthocyanidin.
Conformational analysis
of flavonoid structures on torsion angle
τ (in degrees) and their respective high-energy and low-energy
conformational states. (A, B) Flavonol, (C, D) flavan-3-ol, and (E,
F) anthocyanidin.It is expected that neutral
structures of anthocyanidin, flavonol,
and flavone present high aromaticity when compared with the other
analyzed flavonoids. Therefore, the aromaticity of the structures
can contribute to understand the antioxidant mechanism. The number
and position of hydroxyl groups have been widely studied regarding
the antioxidant activity.[14,46−51] For example, for luteolin, it was demonstrated that by removing
the O3H group in ring C, the antioxidant activity consequently decreases.[46] Moreover, the importance of ring C unsaturation
was pointed out, which allows electron delocalization for stabilization
of the aryloxyl radical.[46] We have found
that isotropic NICS(1) values of anthocyanidin ring C are larger than
the values of other studied flavonoid structures, suggesting that
the ketone group decreases the aromaticity, while the hydroxyl group
increases the aromaticity jointly to the hydrogen bond, as expected
from the substituent effects. Besides, high dipole moments were found
for the deprotonated molecules; however, in neutral molecules, the
highest values were found in flavone, flavonol, and anthocyanidin,
which are also the planar structures (Table ). Additionally, flavonol and anthocyanidin
tend to be planar (Table ). In contrast to flavan-3-ol, the molecular planarity of
anthocyanidin and flavanol is characterized by the presence of the
O3H group through a weak hydrogen bond with HC6′, which is
in agreement with the literature.[3]Figure shows the
NICS plots (ppm per r distance in Å), which
are representative of the isotropic, anisotropic, and ZZ (NICSzz)
fields. Negative values of absolute shielding computed at the center
of the molecule indicate the presence of induced diatropic current
(aromaticity), whereas positive values indicate paratropic currents
(antiaromaticity).[52] The r distances were obtained from the neutral structures of the molecules:
flavan, anthocyanidin, flavanone, flavonol, isoflavone, flavone, and
flavan-3-ol. Our NICS results showed that the ring C of the analyzed
flavonoids exhibited a significant reduction in their aromaticity.
Figure 5
NICS values
as a function of the distance r of
the neutral and isotropic NICS(1) displayed numerically for ring C.
The isotropic NICS(1) value (in ppm) was shown for all analyzed flavonoids.
NICS values
as a function of the distance r of
the neutral and isotropic NICS(1) displayed numerically for ring C.
The isotropic NICS(1) value (in ppm) was shown for all analyzed flavonoids.The NICS values demonstrated that only anthocyanidin
has an aromatic
ring C (Figure ).
The formation of the interaction between the hydroxyl group and C4
could improve the planarity of the structure and also increase the
π electrons in ring C. However, it is important to highlight
that we should not neglect the influence of ketoneoxygen for aromaticity
due to the presence of the π electrons associated with this
atom. The antioxidant activity of flavonoids was shown to be dependent
on the stabilization of the O3H group through unsaturation of ring
C.[14,46−51] Despite the presence of planarity in the molecules, the ZZ term
(NICSzz) is well aligned with the anisotropic (NICSanisotropic) term of ring B (Figure ) and the aromaticity only occurs in the
ring C of anthocyanidin (NICSzz and NICSisotropic terms). This result corroborates the high antioxidant activity previously
reported for an anthocyanidin analogue.[46] The chemical shifts (δ) extracted from the NMR of carbon (13C NMR) and oxygen (17O NMR) are shown in Tables and 4. Similar results were found for the calculated 13C NMR concerning previous experimental studies.[49,53,54]
Table 3
Chemical Shifts (δ)
in ppm for 13C Obtained from CAM-B3LYP/def2TZV and HSEh1PBE/cc-pVDZ
Calculations
Using Tetramethylsilane (TMS) as a Reference
CAM-B3LYP/def2TZV
HSEh1PBE/cc-pVDZ
C3
C4
C8
C10
C3
C4
C8
C10
Theoretical
flavan
37.2
29.0
127.6
132.2
33.7
27.4
114.7
120.5
anthocyanidin
156.2
143.6
127.8
130.3
146.3
132.1
116.0
121.9
flavanone
53.0
213.9
127.6
131.6
47.1
194.0
115.3
120.2
flavanol
148.9
190.1
126.8
130.5
139.9
174.7
115.0
121.1
isoflavone
137.8
193.2
126.8
134.9
128.8
176.5
114.7
125.3
flavone
117.7
194.7
126.5
134.8
108.4
177.6
194.7
124.7
flavan-3-ol
140.6
37.3
128.2
132.5
125.3
34.6
115.3
121.6
Experimental
anthocyanidina
143.9
130.9
94.0
111.1
flavonolb
136.2
176.4
93.8
98.7
flavonolc
135.5
175.7
93.4
102.9
flavonec
103.3
182.2
94.2
104.2
Wolniak and Wawer.[53]
Sinha et al.[54]
Scoti
et al.[49]
Table 4
Chemical Shifts (δ) in ppm of
Oxygen (17O NMR) Obtained from CAM-B3LYP/def2TZV and HSEh1PBE/cc-pVDZ
(in Parenthesis) Calculations
compound/atoms
O1
O3
O4
flavan
197.3 (209.3)
anthocyanidin
20.5 (59.1)
215.4 (224.9)
anthocyanidina
14.5
(54.1)
–41.6 (−28.1)
flavanone
187.6 (201.7)
–348.7 (−274.6)
flavonol
133.6 (153.4)
247.9 (252.8)
–160.2 (−112.8)
flavonola
136.1 (149.6)
–20.27
(−15.0)
–253.4 (−190.3)
isoflavone
118.9 (132.2)
–249.3 (−181.9)
flavone
120.6 (137.9)
–258.3 (−202.7)
flavan-3-ol
181.3 (189.2)
156.8 (181.0)
flavan-3-ola
178.9 (189.9)
223.7
(207.4)
Deprotonated structures.
Wolniak and Wawer.[53]Sinha et al.[54]Scoti
et al.[49]Deprotonated structures.The analysis of 17O NMR using CAM-B3LYP/def2TZV and
HSEh1PBE/cc-pVDZ showed that: (1) the results with CAM-B3LYP/def2TZV
are underestimated concerning the results obtained with HSEh1PBE/cc-pVDZ
and (2) in the neutral flavonol structure, the H-bond interaction
formed by O3 is stronger than that by O1, and O1 is stronger than
O4. Similarly, in the structure of anthocyanidin, the H-bond interaction
formed by O3 is stronger than O1.The 17O NMR analysis
of flavonol and anthocyanidin oxygen
indicated the formation of an interaction between O3H and the oxygen
of ketone and C4 of ring C, respectively, thus stabilizing the molecule
in a planar conformation. Moreover, the change in the shielding (ppm)
of the oxygen atoms of flavonol due to deprotonation occurs along
with an increase of 80.09° in the torsion angle τ. Aromatic
rings tend to planarity, but a similar conformational change does
not occur with ring C of flavan-3-ol that differently from flavonol
does not have ketoneoxygen. The change in the shielding (ppm) of
the oxygen due to deprotonation occurs in anthocyanidin similar to
flavonol, but without a change in aromaticity. The energy density
at the critical point divided by the electron density distribution
(H(rc)/ρc) was obtained from AIM calculations, which suggest for the O3H···HC6′
interaction of anthocyanidin and flavonol structures, a hydrogen bond
with a partial electrostatic character, showing 0.15 and 0.18 Hartree/electron,
respectively.To better understand the relevance of the structural
differences
of the investigated flavonoids for theirantioxidant activity, we
also analyzed the energy of the HOMO/LUMO molecular orbitals using
CAM-B3LYP/def2TZV and HSEh1PBE/cc-pvDZ protocols. Both quantum chemistry
calculation protocols showed the same profile. Therefore, Figure shows the HOMO and
LUMO molecular orbitals of the investigated flavonoid structures,
calculated at the CAM-B3LYP/def2TZV level. The HOMO topology of a
phenolic compound may indicate its active site of the free-radical
elimination due to hydrogen abstraction after electron transfer.[55]
Figure 6
Frontier molecular orbitals obtained using CAM-B3LYP/def2TZV
calculations.
Negative regions are represented in red color and positive in green.
(A) Flavan, (B) anthocyanidin, (C) flavanone, (D) flavonol, (E) isoflavone,
(F) flavone, and (G) flavan-3-ol.
Frontier molecular orbitals obtained using CAM-B3LYP/def2TZV
calculations.
Negative regions are represented in red color and positive in green.
(A) Flavan, (B) anthocyanidin, (C) flavanone, (D) flavonol, (E) isoflavone,
(F) flavone, and (G) flavan-3-ol.The analysis of the natural bond orbital (NBO) of ring C showed
π bonds (1) in C9–C10 of flavan; (2) in C3–C4
and C9–C10 of anthocyanidin; (3) in O2–C4 and C9–C10
of flavanone; (4) in O3–C4, C9–C10, and C2–C3
of flavonol; (5) in C2–C3 and C9–C10 of isoflavone;
(6) in O2–C4, C2–C3, and C9–C10 of flavone; and
(7) in C9–C10 of flavan-3-ol. Mendes et al. studied the antioxidant
activities of flavonoids using B3LYP/6-31G(d) calculations and they
found ΔEL–H ranging from
1.72 to 5.88 eV.[36] Payán-Gómez
et al. investigated rutin using DFT with M05-2X/6-31+G(d,p) calculations,
and they showed a HOMO–LUMO transition of 4.28 eV, which is
in the region of ultraviolet electronic transition.[56] However, it is noteworthy that a transition of 3.88 eV
was also previously found for this molecule.[56] According to Payán-Gómez et al., the HOMO–LUMO
transitions were characterized by charge transfers along with the
entire flavonoid structure.[56]Table shows the energies
(eV) of the HOMO–LUMO molecular orbitals, the energy values
of ΔEL–H, IP (kcal·mol–1), and EA (kcal·mol–1); the
charges of ring B and benzo-γ-pyran were obtained using CAM-B3LYP/def2TZV
and HSEh1PBE/cc-pVDZ calculations.
Table 5
ΔEL–H (ELUMO – EHOMO) Values (eV), IP (kcal·mol–1),
EA (kcal·mol–1), and NBO Atomic Charges of
the Benzo-γ-pyran (Chromone) and Ring B for the Neutral and
Deprotonated (d) Structures of the Analyzed Flavonoids
flavan
anthocyanidin
anthocyanidind
flavanone
flavonol
flavonold
isoflavone
flavone
flavan-3-ol
flavan-3-old
CAM-B3LYP/def2TZV
HOMO
–7.55
–11.66
–6.68
–8.14
–7.64
–2.30
–7.88
–8.13
–7.90
–1.94
ΔEL–H
8.46
5.50
4.47
7.35
6.34
4.84
7.04
7.09
8.62
6.19
IP
174.00
268.94
153.94
188.19
176.18
52.95
181.71
187.43
182.13
44.68
EA
21.27
142.20
50.73
18.10
30.11
–58.97
19.28
24.08
–16.77
–98.68
NBOchromone
0.36
0.75
–0.83
–0.03
–0.06
–0,86
–0.04
–0.05
–0.02
–0.99
NBOring B
0.01
0.25
–0.17
0.03
0.06
–0,14
0.04
0.05
0.02
–0.05
HSEh1PBE/cc-pVTZ
HOMO
–5.81
–10.12
–5.14
–6.40
–5.87
–0.64
–6.20
–8.39
–6.08
0.17
ΔEL–H
5.32
2.83
1.87
4.40
3.50
2.20
4.19
6.17
5.51
2.8
IP
134.12
233.42
118.41
147.27
135.35
17.79
142.83
147.43
140.17
–4.02
EA
11.30
168.03
74.92
45.79
54.56
–35.90
46.14
51.29
13.07
–68.57
NBOchromone
0.048
0.72
–0.07
0.03
–0.02
–0.75
–0.14
–0.04
–0.06
–0.74
NBOring B
–0.05
0.28
0.15
–0.02
0.02
–0.25
0.00
0.04
–0.02
–0.34
The energies of the
frontier molecular orbitals (HOMO–LUMO)
are associated with electron donation and acceptance through ionization
potential and electron affinity, respectively.[57,58] Although anthocyanidin has a +1 charge, due to the pyrylium ion,
the EA value showed to be high when compared with other molecules,
showing the known values previously reported for this molecule. Anthocyanidin
also showed aromaticity in ring C, but the low values of BDE and PA
suggest that the high antioxidant activity is explained by the hydroxyl
group. This result is consistent with the sequential proton loss electron
transfer mechanism (SPLET).[25−27] It is important to note that
the values with HSEh1PBE/cc-pVTZ are underestimated concerning the
CAM-B3LYP/def2TZV protocol.[59]According
to Matteini et al., in the rutin structure, the HOMO–LUMO
transitions are characterized by charge transfers in ring B showing
a ΔEL–H value of 7.78 eV.[38] Ninh The et al. studied isoflavones using B3LYP/6-311(d)
and found a ΔEL–H between
4 and 5 eV.[60] We found a similar ΔEL–H value for isoflavone using the HSEh1PBE/cc-pVTZ
protocol.[51] Regarding the ΔEL–H values obtained using the CAM-B3LYP/def2TZV
calculations, the investigated flavonoid structures showed values
consistent with those obtained in previous studies.[38]Table shows
the atomic charges of benzo-γ-pyran and ring B for the investigated
structures. Using the CAM-B3LYP/def2TZV calculations, we demonstrated
that the charge is shifted from benzo-γ-pyran to ring B (Table ). The flavan, protonated
anthocyanidin, and flavanone structures are consistent with the results
obtained using the HSEh1PBE/cc-pVTZ calculations.[3] The long-range functional CAM-B3LYP/def2TZV showed different
results for the charges when compared with the functional hybrid HSEh1PBE/cc-pVDZ.[61] We noted that the results obtained with the
CAM-B3LYP/def2TZV protocol are more accurate due to the additional
polarization functions. Table shows bond dissociation energy values and proton affinity
calculated at 298.15 K and 1 atm. The calculations were carried out
using CAM-B3LYP/def2TZV.The BDE of O–H bonds is a key
concept to analyze the antioxidant
activity, while PA is a conceptual parameter to evaluate the deprotonation.
It is expected that weaker O–H bonds favor the reaction to
inactivate the free radical, as this low value of BDE favors the transfer
of hydrogen from the O3H group to the free radical.[57,58,62,63]Table presents
the BDE and PA values calculated at the CAM-B3LYP/def2TZV level. Our
BDE values showed to be larger than the values from previous DFT studies
of about 85.2 kcal·mol–1 for a flavonol analogue,
and 80.9 kcal·mol–1 for quercetin.[64,65] The present study investigated flavonoid structures with fewer hydroxyls
than these cited studies, and it could explain the differences between
the obtained BDE values. Anthocyanidin has the lowest BDE value, which
is in agreement with the highest antioxidant activity found for this
molecule when compared with the flavonol and flavan-3-ol.[46]
Table 6
Bond Dissociation
Energy Values (BDE,
kcal·mol–1) and Proton Affinity (PA, kcal·mol–1) of Anthocyanidin, Flavonol, and Flavan-3-ol
anthocyanidin
flavonol
flavan-3-ol
BDE
63.32
91.36
110.55
PA
239.16
337.77
394.32
It is well known that SPLET is determined
by proton affinity.[46,66] Our PA values of the flavonoid
structures corroborate those investigated
by Ninh The et al.[51] The low BDE and PA
values of anthocyanidin demonstrate that its structure possesses a
strong antioxidant activity that could be explained by the dissociation
of the hydrogen bond.The values presented in Table are smaller (absolute value)
than those obtained at
B3LYP/6-311++G**.[3] The values of hydrogens
of O3H and the oxygen of ketone (OC4) of the flavonol structure showed
differences due to the bond formation. Similar results were obtained
for the oxygen of the O3H and hydrogen (HC6′) of the flavonol
structure. The OC4 and O3H′ hydrogen charges also suggest the
formation of a hydrogen bond in the flavonol structure.
Table 7
Calculated Atomic Charge (NBO) of
Oxygen (O3H), Hydrogen (HC6′), Hydrogen (O3H), and Carbon-Bound
Oxygen (OC4) of the Flavonoids Using the CAM-B3LYP/def2TZV Calculations
atoms
flavan
anthocyanidin
flavanone
flavonol
isoflavone
flavone
flavan-3-ol
O3H(O)
–0.633
–0.655
–0.696
HC6′
0.261
0.213
0.256
0.234
0.221
0.209
O3H(H)
0.503
0.505
0.463
OC4
–0.512
–0.583
–0.541
–0.542
Conclusions
In the present study, we revised conformational, electronic, and
structural properties related to the antioxidant activity of seven
flavonoid structures and presented novel information regarding their
magnetic properties. The conformational analyzes of anthocyanidin,
flavonol, and flavan-3-ol indicate the stabilization of the molecules
with increased planarity due to the formation of the H-bond interaction
between O1 and HC6′. The analysis of flavonol also indicates
the existence of a hydrogen bond between the hydroxyl group (O3H)
and the oxygen of ketone that stabilizes its molecular structure,
improving the planar conformation. Comparing the aromaticity results
of flavonol, flavone, and anthocyanidin, we found that the planarity
and the interaction between O3H and HC6′ contributed to the
aromaticity of ring C. Similar to the expected behavior of the substituent
effect, the analysis of the aromaticity of ring C showed that the
hydroxyl group improves the aromaticity and the ketone group decreases
the aromaticity.[67] The importance of the
ketone group is also seen in the oxygen NMR chemical shift of flavonol,
as the δ in O2 shows that it is more strongly bonded than O1.
NMR also indicates an H bond between O3H and the oxygen of ketone.Regarding anthocyanidin, our results demonstrated that its lower
PA and BDE values, when compared with flavonol and flavan-3-ol, indicate
that it has the highest antioxidant activity. Furthermore, our results
indicate that the anthocyanidin aromaticity is not related to electron
transfer.Finally, the NBO atomic charge values are displaced
from ring B
to benzo-γ-pyran in flavan, neutral anthocyanidin, flavanone,
and neutral flavan-3-ol. The values obtained for the charges are related
to the interactions between O3H and the oxygen of ketone and between
O3H and HC6′.
Methodology
Flavonoid Structures
Initially, the
flavonoid structures were obtained in the PubChem database in the
MOL2 format.[68] The following flavonoid
structures from the natural origin were selected due to their reported
antioxidant activities: flavan (CID 94156, C15H14O, Figure A), anthocyanidin
(CID 414159, (C15H11O2)+; Figure B), flavanone
(CID 10251, C15H12O2; Figure C), flavonol (CID 11349, C15H10O3; Figure D), isoflavone (CID 72304, C15H10O2; Figure E), flavone (CID 10680, C15H10O2; Figure F), and flavan-3-ol (CID 3707243, C15H14O2; Figure G).
Electronic and Structural Analysis
The
self-consistent field calculations of flavonoid structures were
performed using DFT.[69] DFT has been a useful
method to study the structural, electronic, and magnetic molecular
properties of compounds.[16,37,58,70−72] The CAM-B3LYP
functional was used with the split valence def2TZV basis set of Ahlrichs
et al. (CAM-B3LYP/def2TZV).[73−76] We selected the CAM-B3LYP functional due to its well-established
and useful application to investigate chemical structures.[77] The correlation consistent cc-pVDZ basis set
was also applied to study the aromaticity and the oxidation of the
aromatic ring in the flavonoid structures.[78] We used CAM-B3LYP/def2TZV to performs the conformational, electronic,
and magnetic analyses. We performed a relaxed scanning for all structural
optimizations of the flavonoids. The balanced polarized triple-zeta
def2TZV basis set has presented satisfactory structural results in
the literature.[79] Recently, we have used
CAM-B3LYP and def2TZV basis sets for structural analyses and the results
showed to agree with the experimental data.[71,80] These computational methods are efficient and less time-consuming
to analyze conformations. Besides, we compared the conformational
analyses obtained with CAM-B3LYP/def2TZV calculations with the hybrid
functional HSEh1PBE/cc-pVDZ. The HSEh1PBE level of density functional
theory has been widely used to study the frontier molecular orbitals
and NMR spectra.[81]The calculations
were carried out in the Gaussian09 package[82,83] in the gas phase (vacuum). Conformational analyses were performed
varying the dihedral angles τ present in the atoms O1–C2–C1′–C6′
with steps containing 10° totalizing 18 minimization cycles using
CAM-B3LYP/def2TZV. Frontier molecular orbitals HOMO and LUMO were
analyzed using the CAM-B3LYP/def2TZV and HSEh1PBE/cc-pVDZ levels.
Atoms in molecules (AIM) analysis was carried out using the AIMAll
package.[84]
Magnetic
Properties Analysis
The
investigation of the aromaticity was carried out through the nucleus-independent
chemical shift (NICS) method.[35] This method
consists of the calculation of 1H NMR, employing ghost
atoms defined preferably in the center of the molecule ring (NICS
0) or at a point outside the plane and perpendicular to the molecule
at 1 Å (NICS 1). The NICS values were calculated with the Gauge-independent
atomic orbital (GIAO),[85] using the cc-pVDZ
basis set with the hybrid functional HSEh1PBE (HSEh1PBE/cc-pVDZ) and
compared with the results obtained from CAM-B3LYP/def2TZV calculations.The NICS method has been extensively tested on planar and cyclic
molecules, but aromaticity can also occur on nonplanar molecules.[86,87] An NICSisotropic(1) value more negative than NICSisotropic(0) is expected in planar aromatic rings. All calculated
NICS values are on the z-axis of the ring. The NICSzz
procedure has been used to investigate the aromaticity of cyclic structures.[88] We applied the NICS(0) plus NICS(1) procedure
to explore the aromaticity of the rings of the seven selected flavonoids.
Authors: Mércia Marques Jucá; Francisco Mauricio Sales Cysne Filho; Jamily Cunha de Almeida; Dara da Silva Mesquita; Jéssica Rodrigues de Moraes Barriga; Kátia Cilene Ferreira Dias; Talita Matias Barbosa; Luna Costa Vasconcelos; Luzia Kalyne Almeida Moreira Leal; José Eduardo Ribeiro; Silvânia Maria Mendes Vasconcelos Journal: Nat Prod Res Date: 2018-11-16 Impact factor: 2.861
Authors: Anna P S Mendes; Rosivaldo S Borges; Antonio M J Chaves Neto; Luiz G M de Macedo; Albérico B F da Silva Journal: J Mol Model Date: 2012-04-14 Impact factor: 1.810
Authors: Sunghwan Kim; Paul A Thiessen; Evan E Bolton; Jie Chen; Gang Fu; Asta Gindulyte; Lianyi Han; Jane He; Siqian He; Benjamin A Shoemaker; Jiyao Wang; Bo Yu; Jian Zhang; Stephen H Bryant Journal: Nucleic Acids Res Date: 2015-09-22 Impact factor: 16.971