Literature DB >> 33837746

Sisyphus observed: Unraveling the high ATP usage of an RNA chaperone.

Elizabeth C Duran1, Nils G Walter2.   

Abstract

DEAD-box proteins are nonprocessive RNA helicases that can function as RNA chaperones by coupling ATP binding and hydrolysis to structural reorganization of RNA. Here, Jarmoskaite et al. quantify the ATP utilization of an RNA chaperone during refolding of a misfolded ribozyme substrate. Strikingly, 100 ATP hydrolysis events are needed per successfully refolded ribozyme, suggesting that each round of unfolding requires ten ATP molecules, since 90% of substrate unfolding cycles only lead back to the kinetically favored misfolded state. This near-Sisyphean effort reveals a potentially conserved model for RNA reorganization by RNA chaperones.
Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  ATP hydrolysis; RNA chaperone; RNA folding; group I intron ribozyme

Year:  2021        PMID: 33837746      PMCID: PMC7948966          DOI: 10.1016/j.jbc.2021.100265

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  10 in total

Review 1.  ATP utilization and RNA conformational rearrangement by DEAD-box proteins.

Authors:  Arnon Henn; Michael J Bradley; Enrique M De La Cruz
Journal:  Annu Rev Biophys       Date:  2012-02-13       Impact factor: 12.981

2.  A DEAD-box protein functions as an ATP-dependent RNA chaperone in group I intron splicing.

Authors:  Sabine Mohr; John M Stryker; Alan M Lambowitz
Journal:  Cell       Date:  2002-06-14       Impact factor: 41.582

3.  Nonspecific binding to structured RNA and preferential unwinding of an exposed helix by the CYT-19 protein, a DEAD-box RNA chaperone.

Authors:  Pilar Tijerina; Hari Bhaskaran; Rick Russell
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-30       Impact factor: 11.205

4.  Kinetic redistribution of native and misfolded RNAs by a DEAD-box chaperone.

Authors:  Hari Bhaskaran; Rick Russell
Journal:  Nature       Date:  2007-10-25       Impact factor: 49.962

5.  DEAD-box protein CYT-19 is activated by exposed helices in a group I intron RNA.

Authors:  Inga Jarmoskaite; Hari Bhaskaran; Soenke Seifert; Rick Russell
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-07       Impact factor: 11.205

6.  The paradoxical behavior of a highly structured misfolded intermediate in RNA folding.

Authors:  Rick Russell; Rhiju Das; Hyejean Suh; Kevin J Travers; Alain Laederach; Mark A Engelhardt; Daniel Herschlag
Journal:  J Mol Biol       Date:  2006-08-15       Impact factor: 5.469

7.  The long-range P3 helix of the Tetrahymena ribozyme is disrupted during folding between the native and misfolded conformations.

Authors:  David Mitchell; Inga Jarmoskaite; Nikhil Seval; Soenke Seifert; Rick Russell
Journal:  J Mol Biol       Date:  2013-05-20       Impact factor: 5.469

Review 8.  Distinct RNA-unwinding mechanisms of DEAD-box and DEAH-box RNA helicase proteins in remodeling structured RNAs and RNPs.

Authors:  Benjamin Gilman; Pilar Tijerina; Rick Russell
Journal:  Biochem Soc Trans       Date:  2017-11-17       Impact factor: 5.407

Review 9.  Functional roles of DExD/H-box RNA helicases in Pre-mRNA splicing.

Authors:  Yen-Chi Liu; Soo-Chen Cheng
Journal:  J Biomed Sci       Date:  2015-07-16       Impact factor: 8.410

10.  ATP utilization by a DEAD-box protein during refolding of a misfolded group I intron ribozyme.

Authors:  Inga Jarmoskaite; Pilar Tijerina; Rick Russell
Journal:  J Biol Chem       Date:  2020-12-05       Impact factor: 5.157

  10 in total

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