Literature DB >> 33833247

An improved biolistic delivery and analysis method for evaluation of DNA and CRISPR-Cas delivery efficacy in plant tissue.

Kyle Miller1, Alan L Eggenberger1,2, Keunsub Lee2,3, Fei Liu1, Minjeong Kang2,3,4, Madison Drent1, Andrew Ruba1, Tyler Kirscht1, Kan Wang5,6, Shan Jiang7,8,9.   

Abstract

Biolistic delivery is widely used for genetic transformation but inconsistency between bombardment samples for transient gene expression analysis often hinders quantitative analyses. We developed a methodology to improve the consistency of biolistic delivery results by using a double-barrel device and a cell counting software. The double-barrel device enables a strategy of incorporating an internal control into each sample, which significantly decreases variance of the results. The cell counting software further reduces errors and increases throughput. The utility of this new platform is demonstrated by optimizing conditions for delivering DNA using the commercial transfection reagent TransIT-2020. In addition, the same approach is applied to test the efficacy of multiple gRNAs for CRISPR-Cas9-mediated gene editing. The novel combination of the bombardment device and analysis method allows simultaneous comparison and optimization of parameters in the biolistic delivery. The platform developed here can be broadly applied to any target samples using biolistics, including animal cells and tissues.

Entities:  

Year:  2021        PMID: 33833247     DOI: 10.1038/s41598-021-86549-9

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  7 in total

1.  Stable transformation of plant cells by particle bombardment/biolistics.

Authors:  Julie R Kikkert; José R Vidal; Bruce I Reisch
Journal:  Methods Mol Biol       Date:  2005

2.  Biolistic DNA delivery to leaf tissue of plants with the non-vacuum gene gun (HandyGun).

Authors:  Anssi L Vuorinen; Arto Nieminen; Victor Gaba; Sidona Sikorskaite; Jari P T Valkonen
Journal:  Methods Mol Biol       Date:  2013

3.  Rust secreted protein Ps87 is conserved in diverse fungal pathogens and contains a RXLR-like motif sufficient for translocation into plant cells.

Authors:  Biao Gu; Shiv D Kale; Qinhu Wang; Dinghe Wang; Qiaona Pan; Hua Cao; Yuling Meng; Zhensheng Kang; Brett M Tyler; Weixing Shan
Journal:  PLoS One       Date:  2011-11-04       Impact factor: 3.240

4.  A simple test for the cleavage activity of customized endonucleases in plants.

Authors:  Nagaveni Budhagatapalli; Sindy Schedel; Maia Gurushidze; Stefanie Pencs; Stefan Hiekel; Twan Rutten; Stefan Kusch; Robert Morbitzer; Thomas Lahaye; Ralph Panstruga; Jochen Kumlehn; Goetz Hensel
Journal:  Plant Methods       Date:  2016-03-09       Impact factor: 4.993

5.  CellProfiler 3.0: Next-generation image processing for biology.

Authors:  Claire McQuin; Allen Goodman; Vasiliy Chernyshev; Lee Kamentsky; Beth A Cimini; Kyle W Karhohs; Minh Doan; Liya Ding; Susanne M Rafelski; Derek Thirstrup; Winfried Wiegraebe; Shantanu Singh; Tim Becker; Juan C Caicedo; Anne E Carpenter
Journal:  PLoS Biol       Date:  2018-07-03       Impact factor: 8.029

6.  High-frequency random DNA insertions upon co-delivery of CRISPR-Cas9 ribonucleoprotein and selectable marker plasmid in rice.

Authors:  Raviraj Banakar; Alan L Eggenberger; Keunsub Lee; David A Wright; Karthik Murugan; Scott Zarecor; Carolyn J Lawrence-Dill; Dipali G Sashital; Kan Wang
Journal:  Sci Rep       Date:  2019-12-27       Impact factor: 4.379

7.  Comparison of CRISPR-Cas9/Cas12a Ribonucleoprotein Complexes for Genome Editing Efficiency in the Rice Phytoene Desaturase (OsPDS) Gene.

Authors:  Raviraj Banakar; Mollie Schubert; Michael Collingwood; Christopher Vakulskas; Alan L Eggenberger; Kan Wang
Journal:  Rice (N Y)       Date:  2020-01-21       Impact factor: 4.783

  7 in total
  4 in total

Review 1.  CRISPR/Cas9 Technique for Temperature, Drought, and Salinity Stress Responses.

Authors:  Xiaohan Li; Siyan Xu; Martina Bianca Fuhrmann-Aoyagi; Shaoze Yuan; Takeru Iwama; Misaki Kobayashi; Kenji Miura
Journal:  Curr Issues Mol Biol       Date:  2022-06-08       Impact factor: 2.976

Review 2.  Advances in Delivery Mechanisms of CRISPR Gene-Editing Reagents in Plants.

Authors:  Larissa C Laforest; Satya Swathi Nadakuduti
Journal:  Front Genome Ed       Date:  2022-01-24

3.  Transformation of Teosinte (Zea mays ssp. parviglumis) via Biolistic Bombardment of Seedling-Derived Callus Tissues.

Authors:  Jacob D Zobrist; Susana Martin-Ortigosa; Keunsub Lee; Mercy K Azanu; Q Ji; Kan Wang
Journal:  Front Plant Sci       Date:  2021-12-09       Impact factor: 5.753

4.  Principles of Nanoparticle Design for Genome Editing in Plants.

Authors:  Pushkal Sharma; Tedrick Thomas Salim Lew
Journal:  Front Genome Ed       Date:  2022-03-07
  4 in total

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