Literature DB >> 33817018

Performance analysis of lightweight CNN models to segment infectious lung tissues of COVID-19 cases from tomographic images.

Tharun J Iyer1, Alex Noel Joseph Raj2, Sushil Ghildiyal1, Ruban Nersisson1.   

Abstract

The pandemic of Coronavirus Disease-19 (COVID-19) has spread around the world, causing an existential health crisis. Automated detection of COVID-19 infections in the lungs from Computed Tomography (CT) images offers huge potential in tackling the problem of slow detection and augments the conventional diagnostic procedures. However, segmenting COVID-19 from CT Scans is problematic, due to high variations in the types of infections and low contrast between healthy and infected tissues. While segmenting Lung CT Scans for COVID-19, fast and accurate results are required and furthermore, due to the pandemic, most of the research community has opted for various cloud based servers such as Google Colab, etc. to develop their algorithms. High accuracy can be achieved using Deep Networks but the prediction time would vary as the resources are shared amongst many thus requiring the need to compare different lightweight segmentation model. To address this issue, we aim to analyze the segmentation of COVID-19 using four Convolutional Neural Networks (CNN). The images in our dataset are preprocessed where the motion artifacts are removed. The four networks are UNet, Segmentation Network (Seg Net), High-Resolution Network (HR Net) and VGG UNet. Trained on our dataset of more than 3,000 images, HR Net was found to be the best performing network achieving an accuracy of 96.24% and a Dice score of 0.9127. The analysis shows that lightweight CNN models perform better than other neural net models when to segment infectious tissue due to COVID-19 from CT slices.
© 2021 Iyer et al.

Entities:  

Keywords:  COVID-19; Computed tomography; Convolutional neural networks; High-Resolution Network (HR Net); Segmentation; Segmentation Network (Seg Net); UNet; VGG-UNet

Year:  2021        PMID: 33817018      PMCID: PMC7959645          DOI: 10.7717/peerj-cs.368

Source DB:  PubMed          Journal:  PeerJ Comput Sci        ISSN: 2376-5992


  10 in total

1.  SegNet: A Deep Convolutional Encoder-Decoder Architecture for Image Segmentation.

Authors:  Vijay Badrinarayanan; Alex Kendall; Roberto Cipolla
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2017-01-02       Impact factor: 6.226

2.  Coronavirus Disease 2019 (COVID-19): Role of Chest CT in Diagnosis and Management.

Authors:  Yan Li; Liming Xia
Journal:  AJR Am J Roentgenol       Date:  2020-03-04       Impact factor: 3.959

Review 3.  CT morphology of COVID-19: Case report and review of literature.

Authors:  Okka Wilkea Hamer; Bernd Salzberger; Johannes Gebauer; Christian Stroszczynski; Michael Pfeifer
Journal:  Rofo       Date:  2020-03-26

4.  Correlation of Chest CT and RT-PCR Testing for Coronavirus Disease 2019 (COVID-19) in China: A Report of 1014 Cases.

Authors:  Tao Ai; Zhenlu Yang; Hongyan Hou; Chenao Zhan; Chong Chen; Wenzhi Lv; Qian Tao; Ziyong Sun; Liming Xia
Journal:  Radiology       Date:  2020-02-26       Impact factor: 11.105

5.  A U-Net Deep Learning Framework for High Performance Vessel Segmentation in Patients With Cerebrovascular Disease.

Authors:  Michelle Livne; Jana Rieger; Orhun Utku Aydin; Abdel Aziz Taha; Ela Marie Akay; Tabea Kossen; Jan Sobesky; John D Kelleher; Kristian Hildebrand; Dietmar Frey; Vince I Madai
Journal:  Front Neurosci       Date:  2019-02-28       Impact factor: 4.677

6.  Detection of Covid-19 in Children in Early January 2020 in Wuhan, China.

Authors:  Weiyong Liu; Qi Zhang; Junbo Chen; Rong Xiang; Huijuan Song; Sainan Shu; Ling Chen; Lu Liang; Jiaxin Zhou; Lei You; Peng Wu; Bo Zhang; Yanjun Lu; Liming Xia; Lu Huang; Yang Yang; Fang Liu; Malcolm G Semple; Benjamin J Cowling; Ke Lan; Ziyong Sun; Hongjie Yu; Yingle Liu
Journal:  N Engl J Med       Date:  2020-03-12       Impact factor: 91.245

7.  A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster.

Authors:  Jasper Fuk-Woo Chan; Shuofeng Yuan; Kin-Hang Kok; Kelvin Kai-Wang To; Hin Chu; Jin Yang; Fanfan Xing; Jieling Liu; Cyril Chik-Yan Yip; Rosana Wing-Shan Poon; Hoi-Wah Tsoi; Simon Kam-Fai Lo; Kwok-Hung Chan; Vincent Kwok-Man Poon; Wan-Mui Chan; Jonathan Daniel Ip; Jian-Piao Cai; Vincent Chi-Chung Cheng; Honglin Chen; Christopher Kim-Ming Hui; Kwok-Yung Yuen
Journal:  Lancet       Date:  2020-01-24       Impact factor: 79.321

8.  A Novel Coronavirus from Patients with Pneumonia in China, 2019.

Authors:  Na Zhu; Dingyu Zhang; Wenling Wang; Xingwang Li; Bo Yang; Jingdong Song; Xiang Zhao; Baoying Huang; Weifeng Shi; Roujian Lu; Peihua Niu; Faxian Zhan; Xuejun Ma; Dayan Wang; Wenbo Xu; Guizhen Wu; George F Gao; Wenjie Tan
Journal:  N Engl J Med       Date:  2020-01-24       Impact factor: 91.245

Review 9.  Coronavirus Disease 2019 (COVID-19): A Perspective from China.

Authors:  Zi Yue Zu; Meng Di Jiang; Peng Peng Xu; Wen Chen; Qian Qian Ni; Guang Ming Lu; Long Jiang Zhang
Journal:  Radiology       Date:  2020-02-21       Impact factor: 11.105

  10 in total
  2 in total

1.  COVLIAS 1.0Lesion vs. MedSeg: An Artificial Intelligence Framework for Automated Lesion Segmentation in COVID-19 Lung Computed Tomography Scans.

Authors:  Jasjit S Suri; Sushant Agarwal; Gian Luca Chabert; Alessandro Carriero; Alessio Paschè; Pietro S C Danna; Luca Saba; Armin Mehmedović; Gavino Faa; Inder M Singh; Monika Turk; Paramjit S Chadha; Amer M Johri; Narendra N Khanna; Sophie Mavrogeni; John R Laird; Gyan Pareek; Martin Miner; David W Sobel; Antonella Balestrieri; Petros P Sfikakis; George Tsoulfas; Athanasios D Protogerou; Durga Prasanna Misra; Vikas Agarwal; George D Kitas; Jagjit S Teji; Mustafa Al-Maini; Surinder K Dhanjil; Andrew Nicolaides; Aditya Sharma; Vijay Rathore; Mostafa Fatemi; Azra Alizad; Pudukode R Krishnan; Ferenc Nagy; Zoltan Ruzsa; Mostafa M Fouda; Subbaram Naidu; Klaudija Viskovic; Manudeep K Kalra
Journal:  Diagnostics (Basel)       Date:  2022-05-21

2.  COVLIAS 1.0 vs. MedSeg: Artificial Intelligence-Based Comparative Study for Automated COVID-19 Computed Tomography Lung Segmentation in Italian and Croatian Cohorts.

Authors:  Jasjit S Suri; Sushant Agarwal; Alessandro Carriero; Alessio Paschè; Pietro S C Danna; Marta Columbu; Luca Saba; Klaudija Viskovic; Armin Mehmedović; Samriddhi Agarwal; Lakshya Gupta; Gavino Faa; Inder M Singh; Monika Turk; Paramjit S Chadha; Amer M Johri; Narendra N Khanna; Sophie Mavrogeni; John R Laird; Gyan Pareek; Martin Miner; David W Sobel; Antonella Balestrieri; Petros P Sfikakis; George Tsoulfas; Athanasios Protogerou; Durga Prasanna Misra; Vikas Agarwal; George D Kitas; Jagjit S Teji; Mustafa Al-Maini; Surinder K Dhanjil; Andrew Nicolaides; Aditya Sharma; Vijay Rathore; Mostafa Fatemi; Azra Alizad; Pudukode R Krishnan; Ferenc Nagy; Zoltan Ruzsa; Archna Gupta; Subbaram Naidu; Kosmas I Paraskevas; Mannudeep K Kalra
Journal:  Diagnostics (Basel)       Date:  2021-12-15
  2 in total

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