| Literature DB >> 33812369 |
Randall W Grout1,2, Siu L Hui3,4,5, Timothy D Imler3,6, Sarah El-Azab4, Jarod Baker3, George H Sands7, Mohammad Ateya7, Francis Pike5.
Abstract
BACKGROUND: Many patients with atrial fibrillation (AF) remain undiagnosed despite availability of interventions to reduce stroke risk. Predictive models to date are limited by data requirements and theoretical usage. We aimed to develop a model for predicting the 2-year probability of AF diagnosis and implement it as proof-of-concept (POC) in a production electronic health record (EHR).Entities:
Keywords: Atrial fibrillation; Decision support; Electronic health record; Machine learning; Predictive model; Screening
Mesh:
Year: 2021 PMID: 33812369 PMCID: PMC8019173 DOI: 10.1186/s12911-021-01482-1
Source DB: PubMed Journal: BMC Med Inform Decis Mak ISSN: 1472-6947 Impact factor: 2.796
Logistic regression variable parameters
| Parametera,b | Description | Estimatec | Odds ratio (95% confidence interval) |
|---|---|---|---|
| Intercept | 0.4063 | ||
| Age (years) | 40 ≤ Age < 56 | − 0.9741 | 0.38 (0.36, 0.4) |
| 67 ≤ Age < 77 | 0.7216 | 2.06 (1.94, 2.19) | |
| Age ≥ 77 | 1.5844 | 4.88 (4.54, 5.23) | |
| Heart disease (derived) | Present | 0.5053 | 1.66 (1.55, 1.77) |
| Albumin (g/dL) | Albumin < 3.5 | 0.7438 | 2.1 (1.93, 2.3) |
| BMI (kg/m2) | Missing | 0.0884 | 1.09 (0.99, 1.21) |
| BMI < 18.5 | 0.6086 | 1.84 (1.26, 2.69) | |
| 24.9 ≤ BMI ≤ 29.9 | 0.0384 | 1.04 (0.92, 1.17) | |
| BMI > 29.9 | 0.3723 | 1.45 (1.3, 1.62) | |
| COPD diagnosis | Present | 0.5259 | 1.69 (1.57, 1.82) |
| Gender | Female | − 0.6226 | 0.54 (0.51, 0.56) |
| Heart failure diagnosis | Present | 1.0609 | 2.89 (2.53, 3.31) |
| Insurance | Commercial | − 0.4111 | 0.66 (0.62, 0.71) |
| Medicaid | 0.0378 | 1.04 (0.95, 1.13) | |
| Other/unknown | − 0.8584 | 0.42 (0.39, 0.46) | |
| Kidney disease (derived) | Present | 0.58 | 1.79 (1.59, 2.01) |
| Shock diagnosis | Present | 0.6219 | 1.86 (1.67, 2.08) |
aSee Additional file 1, for codes and logic used for extraction and derivation of parameters
bReference parameters: Age 56–66 years (inclusive), no calculated heart disease, albumin ≥ 3.5 (or missing value), normal BMI (19.5–24.9), no COPD, male, no heart failure, Medicare insurance, no calculated kidney disease, and no shock.
cEach eligible patient had a risk score of exp(raw score)/(1 + exp(raw score)), where the raw score was the sum of the intercept and parameter estimates corresponding to the patients characteristics in each parameter.
Fig. 1Model development cohorts
Characteristics of patients in development set
| Variable | Overall N = 53552 | AF (cases) N = 31474 | No AF (controls) N = 22078 | |
|---|---|---|---|---|
| Demographics | ||||
| Age, mean (SD), years | 66.56 (13.42) | 71.53 (11.87) | 59.48 (12.28) | < .0001 |
| Age, no. (%) years | < .0001 | |||
| 40–55 | 12474 (23.3%) | 3287 (10.4%) | 9187 (41.6%) | |
| 56–66 | 13676 (25.5%) | 6949 (22.1%) | 6727 (30.5%) | |
| 67–77 | 14822 (27.7%) | 10630 (33.8%) | 4192 (19.0%) | |
| > 77 | 12580 (23.5%) | 10608 (33.7%) | 1972 (8.9%) | |
| Sex | < .0001 | |||
| Female | 29044 (54.2%) | 15561 (49.4%) | 13483 (61.1%) | |
| Male | 24507 (45.8%) | 15913 (50.6%) | 8594 (38.9%) | |
| Race, no. (%) | < .0001 | |||
| White | 41493 (77.5%) | 24636 (78.3%) | 16857 (76.4%) | |
| Black | 3225 (6.0%) | 1690 (5.4%) | 1535 (7.0%) | |
| Other | 8834 (16.5%) | 5148 (16.4%) | 3686 (16.7%) | |
| Ethnicity, no. (%) | < .0001 | |||
| Not Hispanic or Latino | 37219 (69.5%) | 22681 (72.1%) | 14538 (65.8%) | |
| Hispanic or Latino | 828 (1.5%) | 402 (1.3%) | 426 (1.9%) | |
| Unknown | 15505 (29.0%) | 8391 (26.7%) | 7114 (32.2%) | |
| Insurance type, No. (%) | < .0001 | |||
| Commercial | 28416 (53.1%) | 16115 (51.2%) | 12301 (55.7%) | |
| Medicaid | 7324 (13.7%) | 4289 (13.6%) | 3035 (13.7%) | |
| Medicare | 11141 (20.8%) | 8432 (26.8%) | 2709 (12.3%) | |
| Other/Unknown | 6671 (12.5%) | 2638 (8.4%) | 4033 (18.3%) | |
| Additional diagnoses and laboratory variables included in final model | ||||
| Acute heart diseasea, no. (%) | 9782 (18.3%) | 7874 (25.0%) | 1908 (8.6%) | < .0001 |
| Albumin < 3.5, no. (%), g/dL | 4110 (7.7%) | 3264 (10.4%) | 846 (3.8%) | < .0001 |
| Body mass index, no. (%), kg/m2 | < .0001 | |||
| Missing | 33926 (63.4%) | 18468 (58.7%) | 15458 (70.0%) | |
| Normal weight: 18.5–24.9 | 4008 (7.5%) | 2684 (8.5%) | 1324 (6.0%) | |
| Obese: ≥ 30 | 9258 (17.3%) | 6139 (19.5%) | 3119 (14.1%) | |
| Overweight: 25–29.9 | 6013 (11.2%) | 3926 (12.5%) | 2087 (9.5%) | |
| Underweight: < 18.5 | 347 (0.6%) | 257 (0.8%) | 90 (0.4%) | |
| COPD, no. (%) | 7891 (14.7%) | 5909 (18.8%) | 1982 (9.0%) | < . 0001 |
| Kidney diseaseb, no. (%) | 4783 (8.9%) | 4060 (12.9%) | 723 (3.3%) | < .0001 |
| Shock, no. (%) | 3365 (6.3%) | 2593 (8.2%) | 772 (3.5%) | |
aIf troponin > 0.04 or diagnosis of myocardial infarction
bBUN > 20 or (creatinine > 1.1 for female) or (creatinine > 1.3 for male) or (diagnoses of Chronic Kidney Disease or End Stage Renal Disease)
Fig. 2ROC curves for development and validation sets for three selected models in this study and comparison to two previous models
Characteristics of patients in the proof-of-concept implementation
| UNAFIED patients | Non-UNAFIED patients | All | |
|---|---|---|---|
| No. | 7916 | 14356 | 22272 |
| Race, no. (%) | |||
| Black or African American | 4129 (52.16%) | 6065 (42.25%) | 10194 (45.77%) |
| White | 3009 (38.01%) | 5189 (36.15%) | 8198 (36.81%) |
| Unknown | 451 (5.70%) | 2114 (14.73%) | 2565 (11.52%) |
| More than one race | 155 (1.96%) | 530 (3.69%) | 685 (3.08%) |
| Native Hawaiian or other Pacific Islander | 45 (0.57%) | 202 (1.41%) | 247 (1.11%) |
| Asian | 109 (1.38%) | 217 (1.51%) | 326 (1.46%) |
| American Indian or Alaska Native | 18 (0.23%) | 39 (0.27%) | 57 (0.26%) |
| Ethnicity, no. (%) | |||
| Not Hispanic, Latino/a, or Spanish origin | 7171 (90.59%) | 10913 (76.02%) | 18084 (81.20%) |
| Hispanic or Latino | 595 (7.52%) | 2982 (20.77%) | 3577 (16.06%) |
| Unknown | 150 (1.89%) | 461 (3.21%) | 611 (2.74%) |
| Age, no. (%), years | |||
| 40–44 | 117 (1.48%) | 3222 (22.44%) | 3339 (14.99%) |
| 45–54 | 445 (5.62%) | 5968 (41.57%) | 6413 (28.79%) |
| 55–64 | 2981 (37.66%) | 4203 (29.28%) | 7184 (32.26%) |
| 65–74 | 2815 (35.56%) | 750 (5.22%) | 3565 (16.01%) |
| 75–84 | 1175 (14.84%) | 152 (1.06%) | 1327 (5.96%) |
| 85+ | 383 (4.84%) | 61 (0.42%) | 444 (1.99%) |
| Age, mean (SD), years | 66.46 (9.82) | 51.99 (8.53) | 57.14 (11.37) |
| Sex, no. (%) | |||
| Female | 3930 (49.65%) | 9113 (63.48%) | 13043 (58.56%) |
| Male | 3986 (50.35%) | 5243 (36.52%) | 9229 (41.44%) |
| CHA2DS2-VASc, mean (SD) | 2.557 (1.83) | 1.213 (1.40) | 1.691 (1.69) |