Literature DB >> 33805612

A Relationship between NTP and Cell Extract Concentration for Cell-Free Protein Expression.

Katsuki Takahashi1, Gaku Sato1, Nobuhide Doi1, Kei Fujiwara1.   

Abstract

The cell-free protein synthesis (CFPS) that synthesizes mRNA and protein from a template DNA has been featured as an important tool to emulate living systems in vitro. However, an obstacle to emulate living cells by CFPS is the loss of activity in the case of usage of high concentration cell extracts. In this study, we found that a high concentration of NTP which inhibits in the case of lower concentration cell extract restored the loss of CFPS activity using high concentration cell extracts. The NTP restoration was independent of the energy regeneration system used, and NTP derivatives also restored the levels of CFPS using a high concentration cell extract. Experiments using dialysis mode of CFPS showed that continuous exchange of small molecule reduced levels of NTP requirement and improved reaction speed of CFPS using the high concentration of cell extract. These findings contribute to the development of a method to understand the condition of living cells by in vitro emulation, and are expected to lead to the achievement of the reconstitution of living cells from biomolecule mixtures.

Entities:  

Keywords:  NTP requirement; cell extract; cell-free protein synthesis (CFPS); reconstitution of living cells; synthetic biology

Year:  2021        PMID: 33805612      PMCID: PMC7999496          DOI: 10.3390/life11030237

Source DB:  PubMed          Journal:  Life (Basel)        ISSN: 2075-1729


  38 in total

1.  The past, present and future of cell-free protein synthesis.

Authors:  Federico Katzen; Geoffrey Chang; Wieslaw Kudlicki
Journal:  Trends Biotechnol       Date:  2005-03       Impact factor: 19.536

2.  Microfluidic screening system based on boron-doped diamond electrodes and dielectrophoretic sorting for directed evolution of NAD(P)-dependent oxidoreductases.

Authors:  Haruna Goto; Yuki Kanai; Arisa Yotsui; Shota Shimokihara; Shunya Shitara; Ryo Oyobiki; Kei Fujiwara; Takeshi Watanabe; Yasuaki Einaga; Yoshinori Matsumoto; Norihisa Miki; Nobuhide Doi
Journal:  Lab Chip       Date:  2020-01-27       Impact factor: 6.799

3.  Regeneration of adenosine triphosphate from glycolytic intermediates for cell-free protein synthesis.

Authors:  D M Kim; J R Swartz
Journal:  Biotechnol Bioeng       Date:  2001-08-20       Impact factor: 4.530

4.  ATP as a biological hydrotrope.

Authors:  Avinash Patel; Liliana Malinovska; Shambaditya Saha; Jie Wang; Simon Alberti; Yamuna Krishnan; Anthony A Hyman
Journal:  Science       Date:  2017-05-19       Impact factor: 47.728

5.  Synthesis of 2.3 mg/ml of protein with an all Escherichia coli cell-free transcription-translation system.

Authors:  Filippo Caschera; Vincent Noireaux
Journal:  Biochimie       Date:  2013-12-08       Impact factor: 4.079

6.  Preparation of Escherichia coli cell extract for highly productive cell-free protein expression.

Authors:  Takanori Kigawa; Takashi Yabuki; Natsuko Matsuda; Takayoshi Matsuda; Rie Nakajima; Akiko Tanaka; Shigeyuki Yokoyama
Journal:  J Struct Funct Genomics       Date:  2004

7.  A novel cell-free protein synthesis system.

Authors:  Kalavathy Sitaraman; Dominic Esposito; George Klarmann; Stuart F Le Grice; James L Hartley; Deb K Chatterjee
Journal:  J Biotechnol       Date:  2004-06-10       Impact factor: 3.307

8.  Biochemical Preparation of Cell Extract for Cell-Free Protein Synthesis without Physical Disruption.

Authors:  Kei Fujiwara; Nobuhide Doi
Journal:  PLoS One       Date:  2016-04-29       Impact factor: 3.240

9.  Regulation of spatiotemporal patterning in artificial cells by a defined protein expression system.

Authors:  Aoi Yoshida; Shunshi Kohyama; Kei Fujiwara; Saki Nishikawa; Nobuhide Doi
Journal:  Chem Sci       Date:  2019-10-16       Impact factor: 9.825

View more
  1 in total

1.  Trends and Outlooks in Synthetic Biology: A Special Issue for Celebrating 10 Years of Life and Its Landmarks.

Authors:  Norizaku Ichihashi; Pasquale Stano
Journal:  Life (Basel)       Date:  2022-01-26
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.