| Literature DB >> 33805064 |
Francesca Sisto1, Simone Carradori2, Paolo Guglielmi3, Mattia Spano3, Daniela Secci3, Arianna Granese3, Anatoly P Sobolev4, Rossella Grande2, Cristina Campestre2, Maria Carmela Di Marcantonio5, Gabriella Mincione5.
Abstract
Following a similar approach on carvacrol-based derivatives, we investigated the synthesis and the microbiological screening against eight strains of H. pylori, and the cytotoxic activity against human gastric adenocarcinoma (AGS) cells of a new series of ether compounds based on the structure of thymol. Structural analysis comprehended elemental analysis and 1H/13C/19F NMR spectra. The analysis of structure-activity relationships within this molecular library of 38 structurally-related compounds reported that some chemical modifications of the OH group of thymol led to broad-spectrum growth inhibition on all isolates. Preferred substitutions were benzyl groups compared to alkyl chains, and the specific presence of functional groups at para position of the benzyl moiety such as 4-CN and 4-Ph endowed the most anti-H. pylori activity toward all the strains with minimum inhibitory concentration (MIC) values up to 4 µg/mL. Poly-substitution on the benzyl ring was not essential. Moreover, several compounds characterized by the lowest minimum inhibitory concentration/minimum bactericidal concentration (MIC/MBC) values against H. pylori were also tested in order to verify a cytotoxic effect against AGS cells with respect to 5-fluorouracil and carvacrol. Three derivatives can be considered as new lead compounds alternative to current therapy to manage H. pylori infection, preventing the occurrence of severe gastric diseases. The present work confirms the possibility to use natural compounds as templates for the medicinal semi-synthesis.Entities:
Keywords: AGS cells; Helicobacter pylori; drug resistance; dual-action agents, antimicrobial activity; semi-synthesis; thymol
Year: 2021 PMID: 33805064 PMCID: PMC8037164 DOI: 10.3390/molecules26071829
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Synthesis of the reported thymol-based compounds 2–39. (a) Functionalization of the OH moiety of thymol (1); (b) ester hydrolysis to provide compound 8.
MIC and MBC values for thymol (1, parent compound), its semi-synthetic derivatives (2–39), and carvacrol against eight strains of H. pylori. Antibiotic susceptibility according to EUCAST guidelines (Clinical Breakpoint Tables v. 11.0, valid from 1 January 2021) is reported for each H. pylori strain.
| Compound | MIC/MBC (μg/mL) | |||||||
|---|---|---|---|---|---|---|---|---|
| 190 | 23 | 110R | NCTC 11637 | F1 | F40/499 | F4 | F34/497 | |
| 128/128 | 128/128 | 128/128 | 128/128 | 64/64 | 64/64 | 64/64 | 64/64 | |
|
| ˃128/˃128 | 128/˃128 | ˃128/˃128 | ˃128/˃128 | 128/128 | 128/128 | ˃128/˃128 | ˃128/˃128 |
|
| 64/64 | 64/128 | 64/64 | 128/128 | 32/32 | 32/32 | 64/128 | 128/128 |
|
| 128/128 | 128/128 | 128/128 | 64/128 | 128/128 | 64/64 | 64/64 | 64/64 |
|
| ˃128/˃128 | ˃128/˃128 | ˃128/˃128 | ˃128/˃128 | 128/128 | ˃128/˃128 | ˃128/˃128 | 128/128 |
|
| 128/128 | 128/128 | 128/128 | 128/128 | 128/128 | 128/128 | 128/128 | 64/64 |
|
| 128/128 | 128/128 | 128/128 | 128/128 | 128/128 | 64/64 | 128/128 | 128/128 |
|
| 64/128 | 64/128 | 128/128 | 64/64 | 128/128 | 128/128 | 128/128 | 128/128 |
|
| 64/64 | 128/128 | 32/32 | 128/128 | 16/16 | 16/16 | 64/128 | 128/128 |
|
| 64/128 | 64/128 | 128/128 | 128/128 | 64/128 | 64/64 | 64/128 | 64/64 |
|
| 64/64 | 64/128 | 128/128 | 64/128 | 64/64 | 64/64 | 64/64 | 64/64 |
|
| 32/32 | 64/128 | 128/128 | 128/128 | 16/64 | 16/16 | 64/128 | 64/128 |
|
| 128/128 | 64/128 | 64/128 | 128/128 | 128/128 | 64/128 | 128/128 | 64/64 |
|
| 128/128 | 128/128 | 64/128 | 64/64 | 128/128 | 32/32 | 128/128 | 64/64 |
|
| 32/32 | 64/64 | 32/64 | 64/64 | 16/16 | 16/16 | 32/64 | 64/64 |
|
| 64/128 | 64/64 | 64/128 | 64/64 | 32/32 | 32/32 | 128/128 | 64/128 |
|
| 32/32 | 64/128 | 64/64 | 64/128 | 16/32 | 8/16 | 64/64 | 32/64 |
|
| 64/128 | 128/128 | 128/128 | 128/128 | 32/32 | 32/32 | 32/32 | 64/128 |
|
| 64/128 | 64/128 | 128/128 | 64/64 | 32/64 | 32/32 | 32/32 | 128/128 |
|
| 128/˃128 | ˃128/˃128 | ˃128/˃128 | ˃128/˃128 | 64/64 | 64/64 | ˃128/˃128 | 128/128 |
|
| 128/˃128 | ˃128/˃128 | ˃128/˃128 | ˃128/˃128 | 64/128 | 64/128 | ˃128/˃128 | 128/128 |
|
| 128/˃128 | ˃128/˃128 | 128/˃128 | 128/˃128 | 32/64 | 32/64 | ˃128/˃128 | 64/64 |
|
| 128/˃128 | 128/˃128 | 128/˃128 | ˃128/˃128 | ˃128/˃128 | ˃128/˃128 | ˃128/˃128 | ˃128/˃128 |
|
| 16/16 | 16/16 | 16/16 | 16/16 | 16/16 | 4/4 | 32/32 | 32/32 |
|
| 32/32 | 32/64 | 64/64 | 64/64 | 16/32 | 8/16 | 32/32 | 32/64 |
|
| 64/64 | 64/128 | ˃128/˃128 | 64/128 | 16/64 | 8/16 | 32/32 | 128/128 |
|
| 64/128 | 32/32 | 64/64 | 32/32 | 32/32 | 16/16 | 32/32 | 64/128 |
|
| 64/128 | 128/128 | 128/128 | 128/128 | 32/32 | 16/16 | 32/32 | 128/128 |
|
| 64/128 | 32/64 | 64/128 | 64/64 | 16/32 | 16/32 | 128/128 | 32/32 |
|
| 128/128 | 64/128 | 128/128 | 128/128 | 8/8 | 16/16 | 32/32 | 64/64 |
|
| 64/64 | 128/128 | 128/128 | 128/128 | 16/64 | 16/16 | 32/64 | 64/128 |
|
| 16/32 | 64/128 | 64/128 | 64/128 | 16/16 | 16/64 | 8/16 | 32/32 |
|
| 128/128 | 64/128 | 128/128 | 128/128 | 32/32 | 32/32 | 32/32 | 128/128 |
|
| 64/64 | 128/128 | 64/64 | 128/128 | 8/16 | 4/8 | 64/64 | 64/64 |
|
| 32/32 | 32/32 | 32/64 | 32/32 | 16/32 | 4/4 | 64/128 | 16/32 |
|
| 32/64 | 32/32 | 16/16 | 32/32 | 32/32 | 32/32 | 32/32 | 128/128 |
|
| ˃128/˃128 | 128/˃128 | ˃128/˃128 | ˃128/˃128 | 128/˃128 | ˃128/˃128 | ˃128/˃128 | 128/˃128 |
|
| 32/64 | 32/64 | 32/64 | 32/32 | 8/8 | 4/4 | 8/16 | 16/32 |
|
| 16/16 | 32/64 | 32/64 | 16/32 | 16/32 | 16/32 | 32/64 | 16/32 |
| carvacrol | 64/64 | 64/64 | 64/64 | 64/64 | 64/64 | 32/64 | 64/64 | 16/32 |
| Antibiotic susceptibility | MTZ | MTZ | MTZ+ | MTZ+ | MTZ | MTZ+ | MTZ+ | MTZ+ |
Antibiotic susceptibility: MTZ+ = metronidazole resistant (MIC > 8 μg/mL); MTZ- = metronidazole susceptible (MIC ≤ 8 μg/mL); CLR+ = clarithromycin resistant (MIC > 0.5 μg/mL); CLR- = clarithromycin susceptible (MIC ≤ 0.25 μg/mL); AMX+ = amoxicillin resistant (MIC > 0.125 μg/mL); AMX- = amoxicillin susceptible (MIC ≤ 0.125 μg/mL). Compounds selected for in vitro anti-proliferative activity assays against AGS cells are highlighted in grey.
IC50 values of the selected and reference compounds are expressed as mean ± standard deviation (SD) of three experiments with quintuplicate determinations.
| Compound | IC50 (μM) a |
|---|---|
|
| 200 ± 6.5 |
|
| 100 ± 5.8 |
|
| 93.5 ± 7.6 |
|
| 365 ± 8.5 |
|
| 607 ± 9.5 |
|
| 396 ± 8.5 |
|
| 613 ± 9.9 |
|
| 600 ± 9.0 |
|
| na |
|
| 574 ± 9.0 |
|
| 194 ± 6.0 |
|
| na |
|
| 300 ± 6.4 |
|
| 82.3 ± 5.6 |
a Data are expressed as mean ± SD, n = 3; na: not active at the maximum concentration tested (800 μM). b from [15].
In silico evaluated physicochemical properties of the top-rated compounds 9, 15, and 38.
| Compound | 9 | 15 | 38 |
|---|---|---|---|
|
| 206.32 | 240.34 | 316.44 |
|
| 1 | 1 | 1 |
|
| 0 | 0 | 0 |
|
| 4.22 | 4.52 | 5.78 |
|
| 0 | 1 | 1 |
|
| high | high | low |
|
| no | no | no |
|
| no alert | no alert | no alert |
|
| 4.30 | 4.55 | 6.21 |
|
| 9.23 | 9.23 | 9.23 |
|
| 5.00 | 5.25 | 6.50 |
|
| −4.24 | −4.87 | −6.12 |
|
| 0.57 | 0.29 | 0.22 |
|
| 5 | 4 | 5 |
|
| 3.87 | 4.36 | 5.48 |
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*Arithmetic mean of the values predicted by five in silico methods: XLOGP3, WLOGP, MLOGP, SILICOS-IT, iLOGP. Parameters range required to satisfy the Lipinski’s rule of five: MW < 500 g/mol, HBD < 5, HBA < 10, log P < 5. a Parameters used for the boiled-egg graph. b Parameters used for the bioavailability radar. Bioavailability radar parameters functional ranges: XLOGP3 between −0.7 and +5.0, MW between 150–500 g/mol, TPSA between 20–130 Å2, log S not higher than 6, saturation: fraction of carbons in the sp hybridization not less than 0.25, and flexibility: no more than 9 rotatable bonds. Boiled-egg graph: white region: high probability of passive absorption by the gastrointestinal tract; yellow region: high probability of brain penetration.