Literature DB >> 33803363

Two Archaeal Metagenome-Assembled Genomes from El Tatio Provide New Insights into the Crenarchaeota Phylum.

Andrés Santos1,2, Pablo Bruna1, Jaime Martinez-Urtaza3, Francisco Solís4, Bernardita Valenzuela4, Pedro Zamorano4,5, Leticia Barrientos1,2.   

Abstract

A phylogenomic and functional analysis of the first two Crenarchaeota MAGs belonging to El Tatio geysers fields in Chile is reported. A soil sample contiguous to a geothermal activity exposed lagoon of El Tatio was used for shotgun sequencing. Afterwards, contigs were binned into individual population-specific genomes data. A phylogenetic placement was carried out for both MAG 9-5TAT and MAG 47-5TAT. Then functional comparisons and metabolic reconstruction were carried out. Results showed that both MAG 9-5TAT and MAG 47-5TAT likely represent new species in the genus Thermoproteus and the genus Sulfolobus, respectively. These findings provide new insights into the phylogenetic and genomic diversity for archaea species that inhabit the El Tatio geysers field and expand the understanding of the Crenarchaeota phylum diversity.

Entities:  

Keywords:  extreme environments; hot-springs; phylogenetic placement

Mesh:

Year:  2021        PMID: 33803363      PMCID: PMC7999037          DOI: 10.3390/genes12030391

Source DB:  PubMed          Journal:  Genes (Basel)        ISSN: 2073-4425            Impact factor:   4.096


  30 in total

1.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

2.  Distribution of greenhouse gases in hyper-arid and arid areas of northern Chile and the contribution of the high altitude wetland microbiome (Salar de Huasco, Chile).

Authors:  Verónica Molina; Yoanna Eissler; Marcela Cornejo; Pierre E Galand; Cristina Dorador; Martha Hengst; Camila Fernandez; Jean Pierre Francois
Journal:  Antonie Van Leeuwenhoek       Date:  2018-04-06       Impact factor: 2.271

3.  Sulfolobus tokodaii sp. nov. (f. Sulfolobus sp. strain 7), a new member of the genus Sulfolobus isolated from Beppu Hot Springs, Japan.

Authors:  Toshiharu Suzuki; Toshio Iwasaki; Taketoshi Uzawa; Kurt Hara; Naoki Nemoto; Takahide Kon; Toshiaki Ueki; Akihiko Yamagishi; Tairo Oshima
Journal:  Extremophiles       Date:  2002-02       Impact factor: 2.395

4.  Arsenite oxidase gene diversity among Chloroflexi and Proteobacteria from El Tatio Geyser Field, Chile.

Authors:  Annette Summers Engel; Lindsey R Johnson; Megan L Porter
Journal:  FEMS Microbiol Ecol       Date:  2012-11-12       Impact factor: 4.194

5.  Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group.

Authors:  Takuro Nunoura; Yoshihiro Takaki; Jungo Kakuta; Shinro Nishi; Junichi Sugahara; Hiromi Kazama; Gab-Joo Chee; Masahira Hattori; Akio Kanai; Haruyuki Atomi; Ken Takai; Hideto Takami
Journal:  Nucleic Acids Res       Date:  2010-12-15       Impact factor: 16.971

6.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

Review 7.  Sulfolobus - A Potential Key Organism in Future Biotechnology.

Authors:  Julian Quehenberger; Lu Shen; Sonja-Verena Albers; Bettina Siebers; Oliver Spadiut
Journal:  Front Microbiol       Date:  2017-12-12       Impact factor: 5.640

8.  Anvi'o: an advanced analysis and visualization platform for 'omics data.

Authors:  A Murat Eren; Özcan C Esen; Christopher Quince; Joseph H Vineis; Hilary G Morrison; Mitchell L Sogin; Tom O Delmont
Journal:  PeerJ       Date:  2015-10-08       Impact factor: 2.984

9.  AAI-profiler: fast proteome-wide exploratory analysis reveals taxonomic identity, misclassification and contamination.

Authors:  Alan J Medlar; Petri Törönen; Liisa Holm
Journal:  Nucleic Acids Res       Date:  2018-07-02       Impact factor: 16.971

View more
  2 in total

Review 1.  Genomic attributes of thermophilic and hyperthermophilic bacteria and archaea.

Authors:  Digvijay Verma; Vinay Kumar; Tulasi Satyanarayana
Journal:  World J Microbiol Biotechnol       Date:  2022-06-13       Impact factor: 3.312

2.  Metagenomic Characterization of Resistance Genes in Deception Island and Their Association with Mobile Genetic Elements.

Authors:  Andrés Santos; Felipe Burgos; Jaime Martinez-Urtaza; Leticia Barrientos
Journal:  Microorganisms       Date:  2022-07-15
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.