| Literature DB >> 33802310 |
Anna Malkova1, Dmitriy Kudlay2,3, Igor Kudryavtsev4,5, Anna Starshinova6, Piotr Yablonskiy1,7, Yehuda Shoenfeld1,8,9.
Abstract
According to an analysis of published data, only 20% of patients with the new coronavirus infection develop severe life-threatening complications. Currently, there are no known biomarkers, the determination of which before the onset of the disease would allow assessing the likelihood of its severe course. The purpose of this literature review was to analyze possible genetic factors characterizing the immune response to the new coronavirus infection that could be associated with the expression of angiotension-converting enzyme 2 (ACE-2) and related proteins as predictors of severe Corona virus disease 2019 (COVID-19). We analyzed original articles published in Medline, PubMed and Scopus databases from December 2019 to November 2020. For searching articles, we used the following keywords: New coronavirus infection, Severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2), COVID-19, severe course, complications, thrombosis, cytokine storm, ACE-2, biomarkers. In total, 3714 publications were selected using the keywords, of which 8 were in congruence with all the criteria. The literature analysis of the association of immunogenic characteristics and the expression of ACE-2 and related proteins with the development of severe COVID-19 revealed following genetic factors: HLA-B*46:01 genotype, CXCR6 gene hypoexpression, CCR9 gene expression, TLR7, rs150892504 mutations in the ERAP2 gene, overexpression of wild-type ACE-2, TMPRSS2 and its different polymorphisms. Genes, associated with the severe course, are more common among men. According to the analysis data, it can be assumed that there are population differences. However, the diagnostic significance of the markers described must be confirmed with additional clinical studies.Entities:
Keywords: ACE-2; COVID-19; HLA; biomarkers; genes; immunological parameters; new coronavirus infection
Year: 2021 PMID: 33802310 PMCID: PMC8001669 DOI: 10.3390/vaccines9030211
Source DB: PubMed Journal: Vaccines (Basel) ISSN: 2076-393X
Figure 1Design of the study.
Studies Selected for Analysis.
| Author | Country | Number of Patients | Study Variables | Method |
|---|---|---|---|---|
| Wang et al., 2020 [ | China | 82 | HLA | Next-generation sequencing (NGS) |
| The Severe Covid-19 genome-wide association study (GWAS) Group, 2020 [ | Spain | 1980 | Single-nucleotide polymorphisms | Global Screening Array (GSA) |
| Lu et al., 2020 [ | UK | 193 deaths from 1412 confirmed infections in the 5871 group | Distribution of genetic variants | GWAS |
| Van Der Made et al., 2020 [ | The Netherlands | 4 | Distribution of genetic variants | Rapid clinical whole-exome sequencing |
| Hou et al., 2020 [ | China | 81,000 human genomes | Distribution of genetic variants | Work with databases |
| Zhao et al., 2020 [ | China | 8 | Single-cell RNA-sequencing | Unsupervised graph-based clustering |
| Cao et al., 2020 [ | China | 1700 variants | Functional coding variants in ACE-2 | Work with databases |
| Zhang et al., 2020 [ | China | 80 | 300 bp locus spanning rs12252 | Next-generation sequencing (NGS) |
Figure 2Possible pathogenetic changes in the immune response in COVID-19.
Genetic factors of severe COVID-19 course.
| Marker Type | Marker | Pathogenetic Effect |
|---|---|---|
| Associated with the immune response | HLA-B*46:01/A25:01/C01:02 | Suitable MHC molecules have a low affinity for the virus proteins, which can make the representatives of this genotype especially vulnerable |
| Hypoexpression of the CXCR6 gene | Encodes chemokine receptor 6 with the CXC motif (CXCR6), which regulates the specific location of lung tissue-resident-memory CD8+ T cells specific against respiratory pathogens | |
| Polymorphism of the CCR9 gene | Encodes a homeostatic and inflammatory chemokine receptor, which is involved in the pathogenesis of pneumonia of various origins and its expression is induced in the early stages of airway inflammation. | |
| X-chromosomal TLR7 gene | Encodes toll-like receptor 7, is associated with the maintenance of the innate immune response against coronaviruses, with the IFN-γ production | |
| rs150892504 mutation of the ERAP2 gene | Encodes metalloaminopeptidase involved in the final modification of antigens for presentation by MHC-I molecules | |
| rs12252 allele of IFITM3 gene | Encodes interferon-induced transmembrane protein 3, which enhances the accumulation of CD8+ T cells in airways to promote mucosal immune cell persistence | |
| ACE-2 protein-associated | ACE-2 wild-type or naïve expression | Risk of severe disease |
| ACE-2 allele | Affects the renin-angiotensin system (RAS) function—the risk of cardiovascular and pulmonary complications | |
| ACE-2 alleles | Facilitates the penetration of SARS-S into host cells | |
| Overexpression of the SLC6A20 gene | Encodes sodium/imino-acid (proline) transporter 1 (SIT1), which functionally interacts with angiotension-converting enzyme 2 | |
| TMPRSS2 wild-type or naïve expression | Risk of severe disease | |
| TMPRSS2 p.Val160Met allele | Risk of severe disease among men |
Gene markers and data of the incidence rate COVID-19 during December 2020.
| Population | HLA Genotypes with a Possible Protective Function | Predisposing HLA Genotypes | ACE Expression | Number of Cases | Number of Severe Cases | % of Severe Cases |
|---|---|---|---|---|---|---|
| Africans/ | C*12:03 | polymorphisms of differential genetic susceptibility to COVID-19 | 2,199,524 | 2.611 | 0.12% | |
| Non-Finnish Europeans (EUR) | C*12:03 | A*25:01 | polymorphisms of differential genetic susceptibility to COVID-19 | 17,480,113 | 28.587 | 0.16% |
| Hispanic/Mixed-race American (AMR) | A*02:02 | C*01:02 | 11,216,585 | 17.025 | 0.15% | |
| East Asians (EAS) | C*12:03 | A*25:01 | 16,893,952 | 27.397 | 0.16% |