| Literature DB >> 33788949 |
Tianyuan Lu1,2, Vincenzo Forgetta1, Haoyu Wu1,3, John R B Perry4, Ken K Ong4,5, Celia M T Greenwood1,3,6,7, Nicholas J Timpson8, Despoina Manousaki1,9, J Brent Richards1,6,10.
Abstract
CONTEXT: Adult height is highly heritable, yet no genetic predictor has demonstrated clinical utility compared to mid-parental height.Entities:
Keywords: ALSPAC; UK Biobank; adult height prediction; parental height; polygenic risk score; short stature
Mesh:
Year: 2021 PMID: 33788949 PMCID: PMC8266463 DOI: 10.1210/clinem/dgab215
Source DB: PubMed Journal: J Clin Endocrinol Metab ISSN: 0021-972X Impact factor: 6.134
Cohort characteristics
| Female | Male | |
|---|---|---|
| UK Biobank training set (N = 354 058) | ||
| Sample size (%) | 191 361 (54.0) | 162 697 (46.0) |
| Mean height in cm (SD) | 162.6 (6.2) | 175.8 (6.8) |
| Mean age (SD) | 56.7 (7.9) | 57.1 (8.1) |
| UK Biobank model selection set (N = 6 639) | ||
| Sample size (%) | 3635 (54.8) | 3004 (45.2) |
| Mean height in cm (SD) | 162.8 (6.2) | 175.7 (6.7) |
| Mean age (SD) | 56.5 (7.8) | 57.1 (8.1) |
| UK Biobank test set (N = 81 902) | ||
| Sample size (%) | 44 304 (54.1) | 37 598 (45.9) |
| Mean height in cm (SD) | 162.6 (6.3) | 175.9 (6.8) |
| Mean age (SD) | 56.6 (7.9) | 57.1 (8.1) |
| ALSPAC | ||
| Children without mid-parental height | ||
| Sample size (%) | 1343 (62.8) | 794 (37.2) |
| Mean height in cm (SD) | 165.9 (6.2) | 180.1 (6.7) |
| Children with mid-parental height (N = 941) | ||
| Sample size (%) | 541 (57.5) | 400 (42.5) |
| Mean height in cm (SD) | 166.5 (6.0) | 180.1 (6.8) |
All Individuals had a European ancestry.
Only 3078 genotyped children with measured adult height were included.
Due to missing data or a parent not being the biological parent.
Figure 1.Summary of polygenic risk score development and evaluation of predictive performance.
Figure 2.Comparison of predictive performance of the polygenic risk score and the mid-parental height in the ALSPAC cohort (N = 941). (A) The genetically predicted height by the polygenic risk score and (B) the mid-parental height were almost equally correlated with the measured adult height of children. (C) Receiver operating characteristic curve and (D) precision recall curve comparing discriminative power for individuals with short stature of the polygenic risk score, the mid-parental height, and combining these 2 predictors in females. (E) Receiver operating characteristic curve and (F) precision recall curve comparing discriminative power for individuals with short stature of the polygenic risk score, the mid-parental height, and combining these 2 predictors in males.
Figure 3.The polygenic risk score may quantify genetic contribution in Khamis-Roche method in place of the mid-parental height. (A) Proportion of variance explained and (B) prediction root mean square error by Khamis-Roche predictors as well as the polygenic risk score and the mid-parental height are compared based on children with available pubertal development information in the ALSPAC cohort. (C) Sample sizes at ages 8 to 17. Time points at which both females and males had ≥50 samples were retained. Children’s chronological age at each survey was rounded to the nearest 0.5 to generate Khamis-Roche predictors. Sex-specific analyses are summarized in Supplementary Figure 6 in (28).