| Literature DB >> 33788425 |
Xinling Li1,2, Xiaoran Duan1, Hui Zhang1, Mingcui Ding1, Yanbin Wang3, Yongli Yang4, Wu Yao1, Xiaoshan Zhou1,2, Wei Wang1,2.
Abstract
BACKGROUND: Polycyclic aromatic hydrocarbons (PAHs) exposure had been reported to be a risk factor of mtDNAcn in our early study. However, the effect of metabolic enzymes' genetic polymorphisms on mtDNAcn in PAHs-Exposure workers has not been fully evaluated. AIM: The aim of the study was to explore the effect of metabolic enzymes' genetic polymorphisms on mtDNAcn in PAHs-Exposure. METHODS ANDEntities:
Keywords: 1-OHPYR; COEs; GSTP1 rs1695; gene polymorphisms; mtDNAcn
Mesh:
Substances:
Year: 2021 PMID: 33788425 PMCID: PMC8388165 DOI: 10.1002/cnr2.1361
Source DB: PubMed Journal: Cancer Rep (Hoboken) ISSN: 2573-8348
Primers sequences for gene polymorphism
| Polymorphism | Primers sequences | |
|---|---|---|
|
| Forward: | 5′‐TTCCTTACTGGTCCTCACATCTC‐3′ |
| Reverse: | 5′‐TCACCGGATCATGGCCAGCA‐3′ | |
|
| Forward: | 5′‐GAACTCCCTGAAAAGCTAAAG C‐3′ |
| Reverse: | 5′‐GTTGGGCTCAAATATACGGTG‐3′ | |
|
| Forward: | 5′‐GCCCTCTGCTAACAAGTCCTAC‐3′ |
| Reverse: | 5′‐GCCCTAAAAAGAAAATCGCCAATC‐3′ | |
| Forward: | 5′‐CTTCCACGCACATCCTCTTCC‐3′ | |
| Reverse: | 5′‐AAGCCCCTTTCTTTGTTCAGC‐3′ | |
| Forward: | 5′‐TCGTCAGTTCCTGAAAGCAGG‐3′ | |
| Reverse: | 5′‐GAGCTCTGATGCAAGTATCGCA‐3′ | |
| Forward: | 5′‐CCAGTCGAGTCTACATTGTCA‐3′ | |
| Reverse: | 5′‐TTCATTCTGTCTTCTAACTGG‐3′ |
Note: Forward represents the upstream primer and reverse represents the downstream primer.
ALB is a control gene used in multiple PCR for GSTT1 and GSTM1.
FIGURE 1(A) PCR products of GSTT1 and GSTM1. M: DNA marker; lanes 1‐4 DNA products; lane 1: GSTT1(−) and GSTM1(−); lane 2: GSTT1(+) and GSTM1(−); lane 3: GSTT1(−) and GSTM1(+); lanes 4: GSTT1(+) and GSTM1(+). (B) PCR‐RLFP products of GSTP1 rs1695. M: DNA marker; lanes 1‐3 DNA products; lane 1: AA; lane 2: AG; lane 3: GG. (C) PCR‐RLFP products of CYP2E1 rs6413432. M: DNA marker; lanes 1‐3 DNA products; lane 1: AA; lane 2: TT; lane 3: AT. (D) PCR‐RLFP products of CYP2E1 rs3813867. M: DNA marker; lanes 1‐3 DNA products; lane 1: GC; lane 2: GG; lane 3: CC
The general characteristics of control and exposure groups
| Variables | Control | Exposure |
| |
|---|---|---|---|---|
| Gender | ||||
| Male | 139 (58.4) | 390 (71.7) | 13.357 | <.001 |
| Female | 99 (41.6) | 154 (28.3) | ||
| Age grouping | ||||
| ≤40 | 142 (59.7) | 273 (50.2) | 5.974 | .015 |
| >40 | 96 (40.3) | 271 (49.8) | ||
| Age (years) | 38.39 ± 8.43 | 40.10 ± 6.30 | 2.800 | .005 |
| Smoking status | ||||
| No | 197 (82.8) | 321 (59.0) | 41.817 | <.001 |
| Yes | 41 (17.2) | 223 (41.0) | ||
| Drinking status | ||||
| No | 138 (58.0) | 248 (45.6) | 10.176 | .001 |
| Yes | 100 (42.0) | 296 (54.4) | ||
| BMI (kg/m2) | ||||
| Low weight | 5 (2.1) | 12 (2.2) | 3.101 | .376 |
| Normal weight | 108 (45.4) | 224 (41.2) | ||
| Overweight | 101 (42.4) | 230 (42.3) | ||
| Obesity | 24 (10.1) | 78 (14.3) | ||
| Cumulative exposure dose | 0.07 (0.06,0.09) | 1.12 (0.34, 2.14) | 22.093 | <.001 |
| 1‐OHPYR | 1.78 ± 0.98 | 4.44 ± 1.15 | 19.953 a | <.001 |
| 1‐OHNAP | 3.02 ± 0.92 | 4.08 ± 1.20 | 3.151 a | .002 |
| 2‐OHNAP | 3.31 ± 0.10 | 4.49 ± 1.03 | 9.792 a | <.001 |
| 3‐OHPHE | 0.99 ± 1.12 | 2.96 ± 1.06 | 16.828 a | <.001 |
| mtDNAcn | 1.03 ± 0.31 | 0.60 ± 0.29 | 18.931 a | <.001 |
Each variable is represented by the number of samples and percentage or mean ± SD.
χ2 test.
t‐test.
Rank sum test.
The effect of general characteristics on mtDNAcn
| Variable | Control | Exposure |
|
| ||
|---|---|---|---|---|---|---|
|
| mtDNAcn ( |
| mtDNAcn ( | |||
| Gender | ||||||
| Male | 139 | 1.00 ± 0.28 | 390 | 0.59 ± 0.30 | 201.939 | <.001 |
| Female | 99 | 1.08 ± 0.34 | 154 | 0.62 ± 0.29 | 133.108 | <.001 |
|
| 3.085 | 0.231 | ||||
|
| 0.080 | 0.631 | ||||
| Age grouping | ||||||
| ≤40 | 142 | 1.05 ± 0.31 | 273 | 0.60 ± 0.28 | 223.722 | <.001 |
| >40 | 96 | 1.01 ± 0.30 | 271 | 0.60 ± 0.31 | 114.037 | <.001 |
|
| 0.816 | 0.062 | ||||
|
| 0.367 | 0.804 | ||||
| Smoking status | ||||||
| No | 197 | 1.04 ± 0.32 | 321 | 0.60 ± 0.29 | 257.887 | <.001 |
| Yes | 41 | 0.99 ± 0.27 | 223 | 0.59 ± 0.29 | 64.900 | <.001 |
|
| 0.030 | 0.201 | ||||
|
| 0.863 | 0.654 | ||||
| Drinking status | ||||||
| No | 138 | 1.05 ± 0.33 | 248 | 0.61 ± 0.30 | 168.387 | <.001 |
| Yes | 100 | 1.01 ± 0.27 | 296 | 0.58 ± 0.29 | 164.549 | <.001 |
|
| 0.065 | 0.650 | ||||
|
| 0.800 | 0.420 | ||||
| BMI (kg/m2) | ||||||
| <24.0 | 113 | 1.01 ± 0.33 | 236 | 0.62 ± 0.30 | 115.357 | <.001 |
| 24.0‐27.9 | 101 | 1.06 ± 0.29 | 230 | 0.58 ± 0.28 | 194.732 | <.001 |
| ≥28 | 24 | 1.03 ± 0.30 | 78 | 0.58 ± 0.33 | 32.382 | <.001 |
|
| 1.530 | 0.783 | ||||
|
| .219 | .458 | ||||
Note: Covariance analysis was used to analyze the effects of the general characteristics on mtDNAcn with the appropriate adjustment of gender, age (years), smoking index, drinking status, and BMI.
Distribution of SNP loci and Hardy–Weinberg equilibrium test
| Gene/SNPs | Genotype | Number | Genotype Frequency | Allele Frequency | Hardy–Weinberg |
|---|---|---|---|---|---|
|
| − | 101 | 0.424 | − | − |
| + | 137 | 0.576 | |||
|
| − | 130 | 0.546 | − | − |
| + | 108 | 0.454 | |||
| AA | 148 | 0.622 | A: 0.790 | 0.039 (0.844) | |
| AG | 80 | 0.336 | G: 0.210 | ||
| GG | 10 | 0.042 | |||
| TT | 144 | 0.605 | T: 0.780 | 0.048 (0.827) | |
| AT | 83 | 0.349 | A: 0.220 | ||
| AA | 11 | 0.046 | |||
| GG | 133 | 0.559 | G: 0.742 | 0.509 (0.476) | |
| CG | 87 | 0.366 | C: 0.258 | ||
| CC | 18 | 0.076 | |||
The Hardy–Weinberg test was performed using the control group.
The effect of metabolic enzyme gene polymorphism on 1‐OHPYR
| Gene/SNPs | Control | Exposure | ||||
|---|---|---|---|---|---|---|
|
| 1‐OHPYR ( |
|
| 1‐OHPYR ( |
| |
|
| ||||||
| − | 35 | 1.79 ± 0.83 | Ref | 150 | 4.49 ± 1.09 | Ref |
| + | 53 | 1.76 ± 1.08 | .768 | 205 | 4.44 ± 1.20 | .936 |
|
| ||||||
| − | 51 | 1.71 ± 0.77 | Ref | 205 | 4.32 ± 1.10 | Ref |
| + | 37 | 1.86 ± 1.22 | .452 | 150 | 4.61 ± 1.21 | .024 |
| AA | 53 | 1.62 ± 0.89 | Ref | 239 | 4.41 ± 1.11 | Ref |
| AG | 32 | 1.95 ± 1.07 | .044 | 107 | 4.46 ± 1.26 | .582 |
| GG | 3 | 2.66 ± 1.04 | .077 | 9 | 5.17 ± 1.04 | .059 |
|
| 0.013 | 0.160 | ||||
| TT | 53 | 1.63 ± 0.82 | Ref | 210 | 4.50 ± 1.11 | Ref |
| AT | 32 | 2.00 ± 1.21 | .260 | 127 | 4.29 ± 1.22 | .067 |
| AA | 3 | 1.87 ± 0.37 | .774 | 18 | 4.82 ± 1.16 | .120 |
|
| 0.307 | 0.747 | ||||
| GG | 49 | 1.64 ± 0.76 | Ref | 216 | 4.41 ± 1.21 | Ref |
| CG | 36 | 1.89 ± 1.20 | .473 | 119 | 4.53 ± 1.01 | .761 |
| CC | 3 | 2.60 ± 1.09 | 0.187 | 20 | 4.32 ± 1.37 | .517 |
|
| 0.219 | 0.830 | ||||
Note: Covariance analysis was used to compare 1‐OHPYR among genotypes, adjusted for gender, age (years), smoking index, drinking status, and BMI. Multiple linear regression analyzed the trend of 1‐OHPYR change with mutant allele loci, adjusting gender, age, smoking index, drinking status, BMI. Ref: The reference group when comparing.
The effect of metabolic enzyme gene polymorphism on mtDNAcn
| SNPs | Control | Exposure | ||||
|---|---|---|---|---|---|---|
|
| mtDNAcn ( |
|
| mtDNAcn ( |
| |
|
| ||||||
| − | 101 | 1.03 ± 0.33 | Ref | 236 | 0.57 ± 0.30 | Ref |
| + | 137 | 1.04 ± 0.30 | .969 | 308 | 0.61 ± 0.29 | .113 |
|
| ||||||
| − | 130 | 1.04 ± 0.29 | Ref | 313 | 0.60 ± 0.30 | Ref |
| + | 108 | 1.02 ± 0.33 | .689 | 231 | 0.60 ± 0.28 | .929 |
| AA | 148 | 1.02 ± 0.29 | Ref | 361 | 0.58 ± 0.29 | Ref |
| AG | 80 | 1.04 ± 0.33 | .585 | 172 | 0.63 ± 0.31 | .062 |
| GG | 10 | 1.17 ± 0.38 | .057 | 11 | 0.56 ± 0.36 | .917 |
|
| 0.132 | 0.126 | ||||
| AA | 148 | 1.02 ± 0.29 | Ref | 361 | 0.58 ± 0.29 | Ref |
| AG + GG | 90 | 1.06 ± 0.34 | .308 | 183 | 0.63 ± 0.31 | .077 |
| TT | 144 | 1.04 ± 0.31 | Ref | 315 | 0.60 ± 0.29 | Ref |
| AT | 83 | 1.03 ± 0.31 | .867 | 199 | 0.59 ± 0.30 | .748 |
| AA | 11 | 0.96 ± 0.32 | .568 | 30 | 0.57 ± 0.27 | .578 |
|
| 0.828 | 0.573 | ||||
| GG | 133 | 1.01 ± 0.29 | Ref | 340 | 0.61 ± 0.30 | Ref |
| CG | 87 | 1.07 ± 0.33 | .231 | 167 | 0.59 ± 0.28 | .644 |
| CC | 18 | 1.06 ± 0.34 | .546 | 37 | 0.52 ± 0.29 | .112 |
|
| 0.261 | 0.168 | ||||
Note: Covariance analysis was used to compare mtDNAcn among genotypes, adjusted for gender, age (years), smoking index, drinking status, and BMI. Multiple linear regression analyzed the trend of mtDNAcn change with mutant allele loci, adjusting gender, age, smoking index, drinking status, BMI. Ref: The reference group when comparing.
The influencing factors of mtDNAcn
| Influencing factors |
|
| |
|---|---|---|---|
| Constant | 1.552 (1.221, 1.884) | 84.278 | <.001 |
| PAHs‐exposure | −0.420 (−0.469, −0.372) | 289.770 | <.001 |
| Male | −0.058 (−0.103, −0.012) | 6.127 | .013 |
| −0.051 (−0. 095, −0.008) | 5.395 | .020 |
Note: GLMs was used to analyze the influencing factors of mtDNAcn adjusted for smoking index, drinking status, and BMI.
Abbreviation: PAHs, polycyclic aromatic hydrocarbons.