| Literature DB >> 33786629 |
Qi Shao1, Yong Huang1, Cai Zhang1, Xiaochan Gao1, Shiyang Gao1.
Abstract
Circular RNAs (circRNAs) are a special class of recently re‑discovered RNAs, which are covalently closed ring RNA molecules. circRNAs have been reported to possess multiple functions and are considered crucial regulators of several processes, and are therefore gaining increasing attention. In recent years, increasing evidence has shown that circRNAs are implicated in several crucial biological processes via regulation of gene expression, and their dysregulation is also associated with the development of numerous diseases, particularly acting as oncogenic or tumor‑suppressor molecules in cancer. Furthermore, circRNAs are involved in cell proliferation, differentiation, apoptosis, invasion and metastasis. In the present review, the biogenesis and functions of circRNAs are described, with a focus on the most recent research advances and the emerging roles of circular homeodomain‑interacting protein kinase 3 (circHIPK3) in human diseases. The present review may provide novel avenues for research on the roles of circHIPK3 as a clinical diagnostic and prognostic biomarker, as well as highlighting promising therapeutic targets for certain diseases and cancer.Entities:
Year: 2021 PMID: 33786629 PMCID: PMC8025471 DOI: 10.3892/mmr.2021.12048
Source DB: PubMed Journal: Mol Med Rep ISSN: 1791-2997 Impact factor: 2.952
Figure 1.Schematic diagram of generation of circHIPK3. The circularization of HIPK3 exon 2 forms circHIPK3 (black arrow). Bule arrow represents ‘head-to-tail’ splicing sites of circHIPK3 by Sanger sequencing. circHIPK3, circular homeodomain-interacting protein kinase 3; Chr, chromosome.
Figure 2.Four main models of circRNA biogenesis. (A) Intron-pairing-driven circularization: ALU elements or flanking inverted repeats form circRNA by intron pairing and the formation of EIciRNAs or ecircRNAs occurs as introns are removed or retained. (B) Lariat-driven circularization. Upstream 3′ splice site joins with a downstream 5′ splice site, resulting in exon-skipping to form an RNA lariat consisting of multiple exons and introns and leads to formation of EIciRNA, ecircRNA and ciRNA. (C) RBP-binding-driven circularization: RBPs interact with the flanking intronic sequence to form EIciRNA or ecircRNA. (D) Intron-splicing-driven circularization: Pre-tRNAs are synthesized from introns; excised tRNA introns deriving from pre-tRNAs are removed by tRNA splicing enzymes and ligate the released end to form tRNA and tricRNA. This image was originally published in a study by Wen et al (36). circRNA, circular RNA; EIciRNA, exon-intron circRNA; ecircRNA, exonic circRNA; tricRNA, tRNA intronic circRNA; ciRNA, circular intronic RNA; RBP, RNA-binding protein.
Figure 3.Biological functions of circRNAs. circRNAs can (A) sponge miRNAs, (B) act as protein sponges, (C) regulate host gene transcription by interacting with U1snRNPs and then binding to Pol II, (D) compete with canonical pre-mRNA splicing to facilitate alternative splicing and (E) encode proteins or peptides, acting as templates for translation. circRNA, circular RNA; miRNA, microRNA; RBP, RNA-binding protein; Pol II, polymerase II; U1snRNPs, U1 small nuclear ribonucleoproteins.
Figure 4.Schematic hypothesis of the regulation of autophagy by circHIPK3. This image was originally published in a study by Chen et al (65). (A) Lung cancer A549 and H838 cells carried a STK11 mutation and lower STK11 copy number and protein expression to silence circHIPK3-induced autophagy, mainly by decreasing pSTAT3 and increasing pPRKAA signaling. (B) H1299 carried wild-type STK11 to silence circHIPK3-induced autophagy, mainly by decreasing STK11-pPRKAA. p, phosphorylated; STK11, serine/threonine kinase 11; PRKAA, protein kinase AMP-activated catalytic subunit α2; circHIPK3, circular RNA homeodomain-interacting protein kinase 3; MIR, microRNA; IL6R, IL-6 receptor.
Functional roles of circHIPK3 in different types of cancer and diseases.
| First author, year | Disease | Expression | Functional roles | Target miRs and genes | Refs. |
|---|---|---|---|---|---|
| Cai | Prostate cancer | Up | Proliferation and invasion | miR-338-3p/ADAM17; miR-193a-3p/MCL1 | ( |
| Yu | Lung cancer | Up | Viability, proliferation and apoptosis | miR-124/SphK1, STAT3, CDK4; miR-149/FOXM1 miR-107/BDNF miR-124-3p/STAT3, PRKAA, AMPKa | ( |
| Yan | Colorectal cancer | Up | Proliferation, migration, invasion and apoptosis | miR-1207-5p/FMNL2 | ( |
| Cheng | Gastric cancer | Down | Unknown | miR-124, miR-29b/COL1A1, COL4A1, CDK6, WNT1 | ( |
| Up | Proliferation and migration | miR-107/BDNF TCF4, β-catenin | |||
| Li | Bladder cancer | Down | Migration, invasion, angiogenesis and metastasis | miR-558/HPSE, VEGF | ( |
| Ke | Nasopharyngeal carcinoma | Up | Proliferation, migration and invasion | miR-4288/ELF3 | ( |
| Kai | Gallbladder cancer | Up | Viability, proliferation and apoptosis | miR-124/ROCK1, CDK6, miR-29b | ( |
| Chen | Hepatocellular carcinoma | Up | Proliferation and migration | miR-124/AQP3 | ( |
| Xiao-Long | Osteosarcoma | Down | Proliferation, migration and invasion | miR-7/miR-124 | ( |
| Hu | Glioma | Up | Proliferation, migration and invasion | miR-654/IGF2BP3, miR-124-3p/STAT3 | ( |
| Teng | Epithelial ovarian cancer | Up | Unknown | Unknown | ( |
| Wang | Oral squamous cell carcinoma | Up | Proliferation | miR-124 | ( |
| Feng | Chronic myeloid leukemia | Up | Unknown | Unknown | ( |
| Liu | Age-related cataract | Down | Viability, proliferation and apoptosis | miR-193a/CRYAA | ( |
| Zhang | Preeclampsia | Down | Migration, invasion and proliferation | Unknown | ( |
| Liu | Pancreatic cancer | Up | Proliferation, invasion, migration and apoptosis | miR-330-5p/RASSF1 | ( |
| Wang | Acute pancreatitis | Up | Infiltration | miR-193a-5p/GSDMD | ( |
| Ni | Cardiac fibrosis | Up | Proliferation and migration | miR-29b-3p/a-SMA, COL1A1, COL3A1 | ( |
| Zhu | Allergic rhinitis | Up | Unknown | miR-495 | ( |
| Lai | Renal cancer | Up | Proliferation and migration | miR-485-3p/Bcl-2, N-cadherin, vimentin, Ki-67, miR-5083P/CXCL13 | ( |
| Qian | Cervical cancer | Up | Proliferation | miR-338-3p/HIF-1α | ( |
| Shu | Thyroid cancer | Up | Proliferation, migration and invasion | miR-338-3p/RAB23 | ( |
| Chen | Breast cancer | Up | Proliferation, migration and invasion | miR-193a/HMGB1/PI3K/AKT | ( |
circHIPK3, circular RNA homeodomain-interacting protein kinase 3; miR, microRNA; CDK, cyclin-dependent kinase; BDNF, brain-derived neurotrophic factor; ROCK1, Rho-associated coiled-coil containing protein kinase 1; ELF3, E74-like ETS transcription factor 3; AQP3, aquaporin 3; IGF2BP3, insulin-like growth factor 2 mRNA binding protein 3; CRYAA, crystallin aA; RASSF1, Ras association domain family member 1; GSDMD, gasdermin D; COL1/3/4A1, collagen type I/III/IV a1 chain; a-SMA, α-smooth muscle actin; HIF-1α, hypoxia-inducible factor 1α; HMGB1, high mobility group box 1; PRKAA, protein kinase AMP-activated catalytic subunit a2; U1snRNPs, U1 small nuclear ribonucleoproteins; IL6R, IL6 receptor; TCF-4, R cell factor 4; HPSE, heparanase; U1snRNPs, U1 small nuclear ribonucleoproteins.