Literature DB >> 33785608

A guide to accurate reporting in digital image acquisition - can anyone replicate your microscopy data?

John M Heddleston1, Jesse S Aaron1, Satya Khuon1, Teng-Leong Chew2.   

Abstract

Recent technological advances have made microscopy indispensable in life science research. Its ubiquitous use, in turn, underscores the importance of ensuring that microscopy-based experiments are replicable and that the resulting data comparable. While there has been a wealth of review articles, practical guides and conferences devoted to the topic of maintaining standard instrument operating conditions, the paucity of attention dedicated to properly documenting microscopy experiments is undeniable. This lack of emphasis on accurate reporting extends beyond life science researchers themselves, to the review panels and editorial boards of many journals. Such oversight at the final step of communicating a scientific discovery can unfortunately negate the many valiant efforts made to ensure experimental quality control in the name of scientific reproducibility. This Review aims to enumerate the various parameters that should be reported in an imaging experiment by illustrating how their inconsistent application can lead to irreconcilable results.
© 2021. Published by The Company of Biologists Ltd.

Keywords:  Accurate reporting; Data reproducibility; Imaging parameters; Microscopy

Mesh:

Year:  2021        PMID: 33785608     DOI: 10.1242/jcs.254144

Source DB:  PubMed          Journal:  J Cell Sci        ISSN: 0021-9533            Impact factor:   5.285


  12 in total

1.  Validation of Excitation-Scan Hyperspectral Multi-faceted Mirror Array Prototype System Advancements to Hyperspectral Imaging Applications.

Authors:  Marina Parker; Sam A Mayes; Craig M Browning; Joshua Deal; Samantha Gunn-Mayes; Thomas C Rich; Silas J Leavesley
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2022-03-02

2.  Quality assessment in light microscopy for routine use through simple tools and robust metrics.

Authors:  Orestis Faklaris; Leslie Bancel-Vallée; Aurélien Dauphin; Baptiste Monterroso; Perrine Frère; David Geny; Tudor Manoliu; Sylvain de Rossi; Fabrice P Cordelières; Damien Schapman; Roland Nitschke; Julien Cau; Thomas Guilbert
Journal:  J Cell Biol       Date:  2022-09-29       Impact factor: 8.077

3.  Mathematical model and genomics construction of developmental biology patterns using digital image technology.

Authors:  Shiwei Ni; Fei Chen; Guolong Chen; Yufeng Yang
Journal:  Front Genet       Date:  2022-08-10       Impact factor: 4.772

4.  Quantifying Human Natural Killer Cell Migration by Imaging and Image Analysis.

Authors:  Amera L Martinez; Michael J Shannon; Shira E Eisman; Everardo Hegewisch-Solloa; Aneeza N Asif; Tasneem A M Ebrahim; Emily M Mace
Journal:  Methods Mol Biol       Date:  2022

5.  MethodsJ2: a software tool to capture metadata and generate comprehensive microscopy methods text.

Authors:  Joel Ryan; Thomas Pengo; Alex Rigano; Paula Montero Llopis; Michelle S Itano; Lisa A Cameron; Guillermo Marqués; Caterina Strambio-De-Castillia; Mark A Sanders; Claire M Brown
Journal:  Nat Methods       Date:  2021-12       Impact factor: 47.990

6.  Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model.

Authors:  Mathias Hammer; Maximiliaan Huisman; Alessandro Rigano; Ulrike Boehm; James J Chambers; Nathalie Gaudreault; Alison J North; Jaime A Pimentel; Damir Sudar; Peter Bajcsy; Claire M Brown; Alexander D Corbett; Orestis Faklaris; Judith Lacoste; Alex Laude; Glyn Nelson; Roland Nitschke; Farzin Farzam; Carlas S Smith; David Grunwald; Caterina Strambio-De-Castillia
Journal:  Nat Methods       Date:  2021-12       Impact factor: 47.990

7.  Avoiding a replication crisis in deep-learning-based bioimage analysis.

Authors:  Romain F Laine; Ignacio Arganda-Carreras; Ricardo Henriques; Guillaume Jacquemet
Journal:  Nat Methods       Date:  2021-10       Impact factor: 28.547

8.  Towards best practices in research: Role of academic core facilities.

Authors:  Leonardo Restivo; Björn Gerlach; Michael Tsoory; Lior Bikovski; Sylvia Badurek; Claudia Pitzer; Isabelle C Kos-Braun; Anne-Laure Mj Mausset-Bonnefont; Jonathan Ward; Michael Schunn; Lucas Pjj Noldus; Anton Bespalov; Vootele Voikar
Journal:  EMBO Rep       Date:  2021-11-04       Impact factor: 8.807

9.  Celebrating FocalPlane and microscopy in Disease Models & Mechanisms.

Authors:  Julija Hmeljak; Esperanza Agullo-Pascual
Journal:  Dis Model Mech       Date:  2021-07-19       Impact factor: 5.758

10.  A Systematic, Open-Science Framework for Quantification of Cell-Types in Mouse Brain Sections Using Fluorescence Microscopy.

Authors:  Juan C Sanchez-Arias; Micaël Carrier; Simona D Frederiksen; Olga Shevtsova; Chloe McKee; Emma van der Slagt; Elisa Gonçalves de Andrade; Hai Lam Nguyen; Penelope A Young; Marie-Ève Tremblay; Leigh Anne Swayne
Journal:  Front Neuroanat       Date:  2021-12-06       Impact factor: 3.856

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