Literature DB >> 33782795

Tritonibacter aquimaris sp. nov. and Tritonibacter litoralis sp. nov., two novel members of the Roseobacter group isolated from coastal seawater.

Na Li1, Xiao-Yan He1, Ning-Hua Liu1, Tie-Ji Gu1, Jian Li1, Yu-Hui Geng1, Shan Zhang1, Peng Wang2,3, Hui-Hui Fu3, Mei Shi1, Xiu-Lan Chen1,2, Yu-Zhong Zhang1,2,3, Xi-Ying Zhang4,5, Qi-Long Qin6.   

Abstract

Two Gram-stain-negative bacterial strains, SM1969T and SM1979T, were isolated from coastal surface seawater of Qingdao, China. They were taxonomically characterized by the phylogenetic, genomic, chemotaxonomic and phenotypic analyses. The two strains shared 97.0% 16S rRNA gene sequence similarity with each other and the highest similarity (96.8-97.5%) with type strains of six species in the genera Shimia, Tritonibacter and Tropicibacter in the Roseobacter group of the family Rhodobacteraceae. In the phylogenetic tree based on single-copy orthologous clusters (OCs), both strains clustered with known species of the genus Tritonibacter and together formed a separate branch adjacent to Tritonibacter ulvae. Although sharing many chemotaxonomic and phenotypic characteristics, the two strains could be differentiated from each other and closely related species by numerous traits. Particularly, strain SM1969T was found to have a DMSP lyase coding gene dddW in its genome and have the ability to produce DMS from DMSP while strain SM1979T was not. The average nucleotide identity and in silico DNA-DNA hybridization values between strains SM1969T and SM1979T and type strains of closely related species were all below the thresholds to discriminate bacterial species, demonstrating that they constitute two new species in the genus Tritonibacter. The names Tritonibacter aquimaris sp. nov. and Tritonibacter litoralis sp. nov. are proposed for the two new species, with type strains being SM1969T (= MCCC 1K04320T = KCTC 72843T) and SM1979T (= MCCC 1K04321T = KCTC 72842T), respectively.

Entities:  

Keywords:  DMSP lyases; Genomic sequencing and analysis; Polyphasic taxonomy; The Roseobacter group; Tritonibacter aquimaris sp. nov.; Tritonibacter litoralis sp. nov.

Year:  2021        PMID: 33782795     DOI: 10.1007/s10482-021-01558-y

Source DB:  PubMed          Journal:  Antonie Van Leeuwenhoek        ISSN: 0003-6072            Impact factor:   2.271


  36 in total

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Authors:  Ming-Hui Chen; Shih-Yi Sheu; Chaolun Allen Chen; Jih-Terng Wang; Wen-Ming Chen
Journal:  Int J Syst Evol Microbiol       Date:  2010-05-07       Impact factor: 2.747

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Authors:  Jim M Dunwell; Alan Purvis; Sawsan Khuri
Journal:  Phytochemistry       Date:  2004-01       Impact factor: 4.072

3.  Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family.

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Journal:  Int J Syst Evol Microbiol       Date:  2002-05       Impact factor: 2.747

4.  High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates.

Authors:  Stephanie A Connon; Stephen J Giovannoni
Journal:  Appl Environ Microbiol       Date:  2002-08       Impact factor: 4.792

5.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

Authors:  Robert C Edgar
Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

Review 6.  Diversity, ecology, and genomics of the Roseobacter clade: a short overview.

Authors:  Thorsten Brinkhoff; Helge-Ansgar Giebel; Meinhard Simon
Journal:  Arch Microbiol       Date:  2008-02-06       Impact factor: 2.552

7.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

8.  Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov.

Authors:  J P Bowman
Journal:  Int J Syst Evol Microbiol       Date:  2000-09       Impact factor: 2.747

Review 9.  Catabolism of dimethylsulphoniopropionate: microorganisms, enzymes and genes.

Authors:  Andrew R J Curson; Jonathan D Todd; Matthew J Sullivan; Andrew W B Johnston
Journal:  Nat Rev Microbiol       Date:  2011-10-11       Impact factor: 60.633

10.  Biochemical, Kinetic, and Spectroscopic Characterization of Ruegeria pomeroyi DddW--A Mononuclear Iron-Dependent DMSP Lyase.

Authors:  Adam E Brummett; Nicholas J Schnicker; Alexander Crider; Jonathan D Todd; Mishtu Dey
Journal:  PLoS One       Date:  2015-05-19       Impact factor: 3.240

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