Literature DB >> 33779499

Insights into circular RNAs: their biogenesis, detection, and emerging role in cardiovascular disease.

Zoe Ward1, John Pearson2, Sebastian Schmeier3, Vicky Cameron1, Anna Pilbrow1.   

Abstract

Circular RNAs (circRNAs) are an evolutionarily conserved form of noncoding RNA with covalently closed loop structures. Initial studies established a functional role for circRNAs as potent microRNA sponges and many other studies have focussed solely on this. However, the biological functions of most circRNAs are still undetermined and other functional roles are gaining traction. These include protein sponges and regulators, and coding for proteins with an alternative mechanism of translation, potentially opening up a whole new transcriptome. The first step to gaining insight into circRNA function is accurate identification and various software platforms have been developed. Specialized detection software has now evolved into whole bioinformatics pipelines that can be used for detection, de novo identification, functional prediction, and validation of circRNAs. However, few cardiovascular circRNA studies have utilized these tools. This review summarizes current knowledge of circRNA biogenesis, bioinformatic detection tools and the emerging role of circRNAs in cardiovascular disease.

Entities:  

Keywords:  Circular RNA; backsplicing; bioinformatics; cardiovascular disease; circRNA; non-coding RNA

Mesh:

Substances:

Year:  2021        PMID: 33779499      PMCID: PMC8632078          DOI: 10.1080/15476286.2021.1891393

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  150 in total

Review 1.  Mechanisms of cell death in heart disease.

Authors:  Klitos Konstantinidis; Russell S Whelan; Richard N Kitsis
Journal:  Arterioscler Thromb Vasc Biol       Date:  2012-05-17       Impact factor: 8.311

2.  Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals.

Authors:  Andranik Ivanov; Sebastian Memczak; Emanuel Wyler; Francesca Torti; Hagit T Porath; Marta R Orejuela; Michael Piechotta; Erez Y Levanon; Markus Landthaler; Christoph Dieterich; Nikolaus Rajewsky
Journal:  Cell Rep       Date:  2014-12-31       Impact factor: 9.423

3.  MicroRNA-31-5p attenuates doxorubicin-induced cardiotoxicity via quaking and circular RNA Pan3.

Authors:  Xiaoyu Ji; Wei Ding; Tao Xu; Xianxin Zheng; Jing Zhang; Mengxin Liu; Gaoli Liu; Jianxun Wang
Journal:  J Mol Cell Cardiol       Date:  2020-03-03       Impact factor: 5.000

4.  The RNA binding protein quaking regulates formation of circRNAs.

Authors:  Simon J Conn; Katherine A Pillman; John Toubia; Vanessa M Conn; Marika Salmanidis; Caroline A Phillips; Suraya Roslan; Andreas W Schreiber; Philip A Gregory; Gregory J Goodall
Journal:  Cell       Date:  2015-03-12       Impact factor: 41.582

Review 5.  Circular RNA and Alzheimer's Disease.

Authors:  Rumana Akhter
Journal:  Adv Exp Med Biol       Date:  2018       Impact factor: 2.622

6.  CIRI: an efficient and unbiased algorithm for de novo circular RNA identification.

Authors:  Yuan Gao; Jinfeng Wang; Fangqing Zhao
Journal:  Genome Biol       Date:  2015-01-13       Impact factor: 13.583

7.  Efficient backsplicing produces translatable circular mRNAs.

Authors:  Yang Wang; Zefeng Wang
Journal:  RNA       Date:  2014-12-01       Impact factor: 4.942

8.  Circular RNA circCHFR Facilitates the Proliferation and Migration of Vascular Smooth Muscle via miR-370/FOXO1/Cyclin D1 Pathway.

Authors:  Lei Yang; Fan Yang; Haikang Zhao; Maode Wang; Yuelin Zhang
Journal:  Mol Ther Nucleic Acids       Date:  2019-04-06

9.  Elevated serum circ_0068481 levels as a potential diagnostic and prognostic indicator in idiopathic pulmonary arterial hypertension.

Authors:  Ying Zhang; Yongbin Chen; Hua Yao; Zhenbang Lie; Guo Chen; Hong Tan; Yingling Zhou
Journal:  Pulm Circ       Date:  2019-11-29       Impact factor: 3.017

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  4 in total

Review 1.  Biological functions, mechanisms, and clinical significance of circular RNA in pancreatic cancer: a promising rising star.

Authors:  Qun Chen; Jiajia Li; Peng Shen; Hao Yuan; Jie Yin; Wanli Ge; Wujun Wang; Guangbin Chen; Taoyue Yang; Bin Xiao; Yi Miao; Zipeng Lu; Pengfei Wu; Kuirong Jiang
Journal:  Cell Biosci       Date:  2022-06-21       Impact factor: 9.584

Review 2.  Mechanism and Potential Target of Blood-Activating Chinese Botanical Drugs Combined With Anti-Platelet Drugs: Prevention and Treatment of Atherosclerotic Cardiovascular Diseases.

Authors:  Dan Li; Yujuan Li; Shengjie Yang; Zongliang Yu; Yanwei Xing; Min Wu
Journal:  Front Pharmacol       Date:  2022-06-03       Impact factor: 5.988

Review 3.  The role of non-coding RNAs in myocarditis: a narrative review.

Authors:  Wenhu Liu; Jing Hu; Shuai Lu; Zhaohui Wang
Journal:  Ann Transl Med       Date:  2022-09

4.  Identification of Three Potential circRNA Biomarkers of Polycystic Ovary Syndrome by Bioinformatics Analysis and Validation.

Authors:  Pengyu Huang; Shengrong Du; Yunhong Lin; Zhiqing Huang; Haiyan Li; Gangxin Chen; Suzhu Chen; Qingfen Chen; Lincui Da; Hang Shi; Wei Wei; Lei Yang; Yan Sun; Beihong Zheng
Journal:  Int J Gen Med       Date:  2021-09-22
  4 in total

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