Literature DB >> 33772005

DNA replication origins retain mobile licensing proteins.

Humberto Sánchez1, Kaley McCluskey1, Theo van Laar1, Edo van Veen1, Filip M Asscher1, Belén Solano1, John F X Diffley2, Nynke H Dekker3.   

Abstract

DNA replication in eukaryotes initiates at many origins distributed across each chromosome. Origins are bound by the origin recognition complex (ORC), which, with Cdc6 and Cdt1, recruits and loads the Mcm2-7 (MCM) helicase as an inactive double hexamer during G1 phase. The replisome assembles at the activated helicase in S phase. Although the outline of replisome assembly is understood, little is known about the dynamics of individual proteins on DNA and how these contribute to proper complex formation. Here we show, using single-molecule optical trapping and confocal microscopy, that yeast ORC is a mobile protein that diffuses rapidly along DNA. Origin recognition halts this search process. Recruitment of MCM molecules in an ORC- and Cdc6-dependent fashion results in slow-moving ORC-MCM intermediates and MCMs that rapidly scan the DNA. Following ATP hydrolysis, salt-stable loading of MCM single and double hexamers was seen, both of which exhibit salt-dependent mobility. Our results demonstrate that effective helicase loading relies on an interplay between protein diffusion and origin recognition, and suggest that MCM is stably loaded onto DNA in multiple forms.

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Year:  2021        PMID: 33772005     DOI: 10.1038/s41467-021-22216-x

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  41 in total

1.  ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex.

Authors:  S P Bell; B Stillman
Journal:  Nature       Date:  1992-05-14       Impact factor: 49.962

2.  A double-hexameric MCM2-7 complex is loaded onto origin DNA during licensing of eukaryotic DNA replication.

Authors:  Cecile Evrin; Pippa Clarke; Juergen Zech; Rudi Lurz; Jingchuan Sun; Stefan Uhle; Huilin Li; Bruce Stillman; Christian Speck
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-12       Impact factor: 11.205

Review 3.  DNA replication timing.

Authors:  Nicholas Rhind; David M Gilbert
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-08-01       Impact factor: 10.005

4.  Concerted loading of Mcm2-7 double hexamers around DNA during DNA replication origin licensing.

Authors:  Dirk Remus; Fabienne Beuron; Gökhan Tolun; Jack D Griffith; Edward P Morris; John F X Diffley
Journal:  Cell       Date:  2009-11-05       Impact factor: 41.582

Review 5.  Chromosome Duplication in Saccharomyces cerevisiae.

Authors:  Stephen P Bell; Karim Labib
Journal:  Genetics       Date:  2016-07       Impact factor: 4.562

6.  Regulated eukaryotic DNA replication origin firing with purified proteins.

Authors:  Joseph T P Yeeles; Tom D Deegan; Agnieszka Janska; Anne Early; John F X Diffley
Journal:  Nature       Date:  2015-03-04       Impact factor: 49.962

7.  Cryo-EM structure of a licensed DNA replication origin.

Authors:  Ferdos Abid Ali; Max E Douglas; Julia Locke; Valerie E Pye; Andrea Nans; John F X Diffley; Alessandro Costa
Journal:  Nat Commun       Date:  2017-12-21       Impact factor: 14.919

8.  The mechanism of eukaryotic CMG helicase activation.

Authors:  Max E Douglas; Ferdos Abid Ali; Alessandro Costa; John F X Diffley
Journal:  Nature       Date:  2018-02-28       Impact factor: 49.962

9.  High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast.

Authors:  Ivan Liachko; Rachel A Youngblood; Uri Keich; Maitreya J Dunham
Journal:  Genome Res       Date:  2012-12-12       Impact factor: 9.043

10.  Cryo-EM structure of Mcm2-7 double hexamer on DNA suggests a lagging-strand DNA extrusion model.

Authors:  Yasunori Noguchi; Zuanning Yuan; Lin Bai; Sarah Schneider; Gongpu Zhao; Bruce Stillman; Christian Speck; Huilin Li
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-25       Impact factor: 11.205

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  6 in total

1.  A helicase-tethered ORC flip enables bidirectional helicase loading.

Authors:  Shalini Gupta; Larry J Friedman; Jeff Gelles; Stephen P Bell
Journal:  Elife       Date:  2021-12-09       Impact factor: 8.140

2.  Structural mechanism for the selective phosphorylation of DNA-loaded MCM double hexamers by the Dbf4-dependent kinase.

Authors:  Julia F Greiwe; Thomas C R Miller; Julia Locke; Fabrizio Martino; Steven Howell; Anne Schreiber; Andrea Nans; John F X Diffley; Alessandro Costa
Journal:  Nat Struct Mol Biol       Date:  2021-12-28       Impact factor: 18.361

Review 3.  In silico reconstitution of DNA replication. Lessons from single-molecule imaging and cryo-tomography applied to single-particle cryo-EM.

Authors:  Julia F Greiwe; Giulia Zanetti; Thomas C R Miller; Alessandro Costa
Journal:  Curr Opin Struct Biol       Date:  2022-01-10       Impact factor: 6.809

4.  Nucleosome-directed replication origin licensing independent of a consensus DNA sequence.

Authors:  Sai Li; Michael R Wasserman; Olga Yurieva; Lu Bai; Michael E O'Donnell; Shixin Liu
Journal:  Nat Commun       Date:  2022-08-23       Impact factor: 17.694

5.  Search and processing of Holliday junctions within long DNA by junction-resolving enzymes.

Authors:  Artur P Kaczmarczyk; Anne-Cécile Déclais; Matthew D Newton; Simon J Boulton; David M J Lilley; David S Rueda
Journal:  Nat Commun       Date:  2022-10-07       Impact factor: 17.694

6.  Mobile origin-licensing factors confer resistance to conflicts with RNA polymerase.

Authors:  Matthias J Scherr; Syafiq Abd Wahab; Dirk Remus; Karl E Duderstadt
Journal:  Cell Rep       Date:  2022-03-22       Impact factor: 9.423

  6 in total

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