Literature DB >> 33768134

Radiomic and radiogenomic modeling for radiotherapy: strategies, pitfalls, and challenges.

James T T Coates1, Giacomo Pirovano2, Issam El Naqa3.   

Abstract

The power of predictive modeling for radiotherapy outcomes has historically been limited by an inability to adequately capture patient-specific variabilities; however, next-generation platforms together with imaging technologies and powerful bioinformatic tools have facilitated strategies and provided optimism. Integrating clinical, biological, imaging, and treatment-specific data for more accurate prediction of tumor control probabilities or risk of radiation-induced side effects are high-dimensional problems whose solutions could have widespread benefits to a diverse patient population-we discuss technical approaches toward this objective. Increasing interest in the above is specifically reflected by the emergence of two nascent fields, which are distinct but complementary: radiogenomics, which broadly seeks to integrate biological risk factors together with treatment and diagnostic information to generate individualized patient risk profiles, and radiomics, which further leverages large-scale imaging correlates and extracted features for the same purpose. We review classical analytical and data-driven approaches for outcomes prediction that serve as antecedents to both radiomic and radiogenomic strategies. Discussion then focuses on uses of conventional and deep machine learning in radiomics. We further consider promising strategies for the harmonization of high-dimensional, heterogeneous multiomics datasets (panomics) and techniques for nonparametric validation of best-fit models. Strategies to overcome common pitfalls that are unique to data-intensive radiomics are also discussed.
© 2021 The Authors.

Entities:  

Keywords:  outcomes; predictive modeling; radiogenomics; radiomics; radiotherapy

Year:  2021        PMID: 33768134      PMCID: PMC7985651          DOI: 10.1117/1.JMI.8.3.031902

Source DB:  PubMed          Journal:  J Med Imaging (Bellingham)        ISSN: 2329-4302


  123 in total

1.  Multivariate modeling of complications with data driven variable selection: guarding against overfitting and effects of data set size.

Authors:  Arjen van der Schaaf; Cheng-Jian Xu; Peter van Luijk; Aart A Van't Veld; Johannes A Langendijk; Cornelis Schilstra
Journal:  Radiother Oncol       Date:  2012-01-20       Impact factor: 6.280

2.  Graph run-length matrices for histopathological image segmentation.

Authors:  Akif Burak Tosun; Cigdem Gunduz-Demir
Journal:  IEEE Trans Med Imaging       Date:  2010-11-22       Impact factor: 10.048

3.  Dose response explorer: an integrated open-source tool for exploring and modelling radiotherapy dose-volume outcome relationships.

Authors:  I El Naqa; G Suneja; P E Lindsay; A J Hope; J R Alaly; M Vicic; J D Bradley; A Apte; J O Deasy
Journal:  Phys Med Biol       Date:  2006-10-19       Impact factor: 3.609

Review 4.  Medical image processing on the GPU - past, present and future.

Authors:  Anders Eklund; Paul Dufort; Daniel Forsberg; Stephen M LaConte
Journal:  Med Image Anal       Date:  2013-06-05       Impact factor: 8.545

5.  Fully automated quantitative cephalometry using convolutional neural networks.

Authors:  Sercan Ö Arık; Bulat Ibragimov; Lei Xing
Journal:  J Med Imaging (Bellingham)       Date:  2017-01-06

6.  Modeling of normal tissue response to radiation: the critical volume model.

Authors:  A Niemierko; M Goitein
Journal:  Int J Radiat Oncol Biol Phys       Date:  1993-01       Impact factor: 7.038

7.  Modeling radiation pneumonitis risk with clinical, dosimetric, and spatial parameters.

Authors:  Andrew J Hope; Patricia E Lindsay; Issam El Naqa; James R Alaly; Milos Vicic; Jeffrey D Bradley; Joseph O Deasy
Journal:  Int J Radiat Oncol Biol Phys       Date:  2006-05-01       Impact factor: 7.038

8.  Quantification of volumetric and geometric changes occurring during fractionated radiotherapy for head-and-neck cancer using an integrated CT/linear accelerator system.

Authors:  Jerry L Barker; Adam S Garden; K Kian Ang; Jennifer C O'Daniel; He Wang; Laurence E Court; William H Morrison; David I Rosenthal; K S Clifford Chao; Susan L Tucker; Radhe Mohan; Lei Dong
Journal:  Int J Radiat Oncol Biol Phys       Date:  2004-07-15       Impact factor: 7.038

Review 9.  Genomics models in radiotherapy: From mechanistic to machine learning.

Authors:  John Kang; James T Coates; Robert L Strawderman; Barry S Rosenstein; Sarah L Kerns
Journal:  Med Phys       Date:  2020-06       Impact factor: 4.071

Review 10.  The Potential of Radiomic-Based Phenotyping in Precision Medicine: A Review.

Authors:  Hugo J W L Aerts
Journal:  JAMA Oncol       Date:  2016-12-01       Impact factor: 31.777

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  2 in total

1.  Applications of Radiomics and Radiogenomics in High-Grade Gliomas in the Era of Precision Medicine.

Authors:  Anahita Fathi Kazerooni; Stephen J Bagley; Hamed Akbari; Sanjay Saxena; Sina Bagheri; Jun Guo; Sanjeev Chawla; Ali Nabavizadeh; Suyash Mohan; Spyridon Bakas; Christos Davatzikos; MacLean P Nasrallah
Journal:  Cancers (Basel)       Date:  2021-11-25       Impact factor: 6.575

Review 2.  Deep Learning With Radiomics for Disease Diagnosis and Treatment: Challenges and Potential.

Authors:  Xingping Zhang; Yanchun Zhang; Guijuan Zhang; Xingting Qiu; Wenjun Tan; Xiaoxia Yin; Liefa Liao
Journal:  Front Oncol       Date:  2022-02-17       Impact factor: 6.244

  2 in total

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