Literature DB >> 33767394

Increasing proteomics throughput.

Nikolai Slavov1,2.   

Abstract

Entities:  

Year:  2021        PMID： 33767394      PMCID： PMC8277682          DOI： 10.1038/s41587-021-00881-z

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  10 in total

1.  Surpassing 10 000 identified and quantified proteins in a single run by optimizing current LC-MS instrumentation and data analysis strategy.

Authors:  Jan Muntel; Tejas Gandhi; Lynn Verbeke; Oliver M Bernhardt; Tobias Treiber; Roland Bruderer; Lukas Reiter
Journal:  Mol Omics       Date:  2019-10-07

2.  Large-scale analysis of the yeast proteome by multidimensional protein identification technology.

Authors:  M P Washburn; D Wolters; J R Yates
Journal:  Nat Biotechnol       Date:  2001-03       Impact factor: 54.908

Review 3.  Statistical power and significance testing in large-scale genetic studies.

Authors:  Pak C Sham; Shaun M Purcell
Journal:  Nat Rev Genet       Date:  2014-05       Impact factor: 53.242

4.  Unpicking the proteome in single cells.

Authors:  Nikolai Slavov
Journal:  Science       Date:  2020-01-31       Impact factor: 47.728

5.  Scanning Quadrupole Data-Independent Acquisition, Part A: Qualitative and Quantitative Characterization.

Authors:  M Arthur Moseley; Christopher J Hughes; Praveen R Juvvadi; Erik J Soderblom; Sarah Lennon; Simon R Perkins; J Will Thompson; William J Steinbach; Scott J Geromanos; Jason Wildgoose; James I Langridge; Keith Richardson; Johannes P C Vissers
Journal:  J Proteome Res       Date:  2017-12-29       Impact factor: 4.466

6.  Genomic variation. Impact of regulatory variation from RNA to protein.

Authors:  Alexis Battle; Zia Khan; Sidney H Wang; Amy Mitrano; Michael J Ford; Jonathan K Pritchard; Yoav Gilad
Journal:  Science       Date:  2014-12-18       Impact factor: 47.728

7.  Ultra-fast proteomics with Scanning SWATH.

Authors:  Christoph B Messner; Vadim Demichev; Nic Bloomfield; Jason S L Yu; Matthew White; Marco Kreidl; Anna-Sophia Egger; Anja Freiwald; Gordana Ivosev; Fras Wasim; Aleksej Zelezniak; Linda Jürgens; Norbert Suttorp; Leif Erik Sander; Florian Kurth; Kathryn S Lilley; Michael Mülleder; Stephen Tate; Markus Ralser
Journal:  Nat Biotechnol       Date:  2021-03-25       Impact factor: 54.908

8.  DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughput.

Authors:  Vadim Demichev; Christoph B Messner; Spyros I Vernardis; Kathryn S Lilley; Markus Ralser
Journal:  Nat Methods       Date:  2019-11-25       Impact factor: 28.547

9.  Single-cell proteomic and transcriptomic analysis of macrophage heterogeneity using SCoPE2.

Authors:  Harrison Specht; Edward Emmott; Aleksandra A Petelski; R Gray Huffman; David H Perlman; Marco Serra; Peter Kharchenko; Antonius Koller; Nikolai Slavov
Journal:  Genome Biol       Date:  2021-01-27       Impact factor: 13.583

10.  Quantitative shotgun proteome analysis by direct infusion.

Authors:  Jesse G Meyer; Natalie M Niemi; David J Pagliarini; Joshua J Coon
Journal:  Nat Methods       Date:  2020-11-23       Impact factor: 28.547
  10 in total
  6 in total

1.  Increasing the throughput of sensitive proteomics by plexDIA.

Authors:  Jason Derks; Andrew Leduc; Georg Wallmann; R Gray Huffman; Matthew Willetts; Saad Khan; Harrison Specht; Markus Ralser; Vadim Demichev; Nikolai Slavov
Journal:  Nat Biotechnol       Date:  2022-07-14       Impact factor: 68.164

Review 2.  Human adaptation to high altitude: a review of convergence between genomic and proteomic signatures.

Authors:  Vandana Sharma; Rajeev Varshney; Niroj Kumar Sethy
Journal:  Hum Genomics       Date:  2022-07-15       Impact factor: 6.481

3.  Phosphorylation regulation of cardiac proteins in Babesia microti infected mice in an effort to restore heart function.

Authors:  Xiaohong Yang; Ningmei Wang; Shuguang Ren; Yuhong Hu; Han Wang; Aimeng Ji; Lihui Cao; Mengxue Li; Jingze Liu; Hui Wang
Journal:  Parasit Vectors       Date:  2022-03-21       Impact factor: 3.876

4.  The Essentials of Multiomics.

Authors:  John L Marshall; Beth N Peshkin; Takayuki Yoshino; Jakob Vowinckel; Håvard E Danielsen; Gerry Melino; Ioannis Tsamardinos; Christian Haudenschild; David J Kerr; Carlos Sampaio; Sun Young Rha; Kevin T FitzGerald; Eric C Holland; David Gallagher; Jesus Garcia-Foncillas; Hartmut Juhl
Journal:  Oncologist       Date:  2022-04-05

5.  dia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts.

Authors:  Vadim Demichev; Lukasz Szyrwiel; Fengchao Yu; Guo Ci Teo; George Rosenberger; Agathe Niewienda; Daniela Ludwig; Jens Decker; Stephanie Kaspar-Schoenefeld; Kathryn S Lilley; Michael Mülleder; Alexey I Nesvizhskii; Markus Ralser
Journal:  Nat Commun       Date:  2022-07-08       Impact factor: 17.694

Review 6.  Single-Cell Proteomics: The Critical Role of Nanotechnology.

Authors:  Carlota Arias-Hidalgo; Pablo Juanes-Velasco; Alicia Landeira-Viñuela; Marina L García-Vaquero; Enrique Montalvillo; Rafael Góngora; Ángela-Patricia Hernández; Manuel Fuentes
Journal:  Int J Mol Sci       Date:  2022-06-16       Impact factor: 6.208
  6 in total

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