Literature DB >> 33767131

Design of buried charged networks in artificial proteins.

Michael Röpke1, Max E Mühlbauer1, Mona Baumgart1, Sam Asami1, Sophie L Mader1, Kai Fredriksson1, Michael Groll1, Ana P Gamiz-Hernandez1,2, Ville R I Kaila3,4.   

Abstract

Soluble proteins are universally packed with a hydrophobic core and a polar surface that drive the protein folding process. Yet charged networks within the central protein core are often indispensable for the biological function. Here, we show that natural buried ion-pairs are stabilised by amphiphilic residues that electrostatically shield the charged motif from its surroundings to gain structural stability. To explore this effect, we build artificial proteins with buried ion-pairs by combining directed computational design and biophysical experiments. Our findings illustrate how perturbation in charged networks can introduce structural rearrangements to compensate for desolvation effects. We validate the physical principles by resolving high-resolution atomic structures of the artificial proteins that are resistant towards unfolding at extreme temperatures and harsh chemical conditions. Our findings provide a molecular understanding of functional charged networks and how point mutations may alter the protein's conformational landscape.

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Year:  2021        PMID: 33767131     DOI: 10.1038/s41467-021-21909-7

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  36 in total

1.  Crystal structure of an Hsp90-nucleotide-p23/Sba1 closed chaperone complex.

Authors:  Maruf M U Ali; S Mark Roe; Cara K Vaughan; Phillipe Meyer; Barry Panaretou; Peter W Piper; Chrisostomos Prodromou; Laurence H Pearl
Journal:  Nature       Date:  2006-04-20       Impact factor: 49.962

2.  Elementary tetrahelical protein design for diverse oxidoreductase functions.

Authors:  Tammer A Farid; Goutham Kodali; Lee A Solomon; Bruce R Lichtenstein; Molly M Sheehan; Bryan A Fry; Chris Bialas; Nathan M Ennist; Jessica A Siedlecki; Zhenyu Zhao; Matthew A Stetz; Kathleen G Valentine; J L Ross Anderson; A Joshua Wand; Bohdana M Discher; Christopher C Moser; P Leslie Dutton
Journal:  Nat Chem Biol       Date:  2013-10-13       Impact factor: 15.040

3.  Structural and thermodynamic consequences of burial of an artificial ion pair in the hydrophobic interior of a protein.

Authors:  Aaron C Robinson; Carlos A Castañeda; Jamie L Schlessman; E Bertrand García-Moreno
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-29       Impact factor: 11.205

4.  Principles that govern the folding of protein chains.

Authors:  C B Anfinsen
Journal:  Science       Date:  1973-07-20       Impact factor: 47.728

5.  Design and synthesis of multi-haem proteins.

Authors:  D E Robertson; R S Farid; C C Moser; J L Urbauer; S E Mulholland; R Pidikiti; J D Lear; A J Wand; W F DeGrado; P L Dutton
Journal:  Nature       Date:  1994-03-31       Impact factor: 49.962

6.  Charges in the hydrophobic interior of proteins.

Authors:  Daniel G Isom; Carlos A Castañeda; Brian R Cannon; Priya D Velu; Bertrand García-Moreno E
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-26       Impact factor: 11.205

7.  Crystal structure of the entire respiratory complex I.

Authors:  Rozbeh Baradaran; John M Berrisford; Gurdeep S Minhas; Leonid A Sazanov
Journal:  Nature       Date:  2013-02-17       Impact factor: 49.962

8.  Design and engineering of an O(2) transport protein.

Authors:  Ronald L Koder; J L Ross Anderson; Lee A Solomon; Konda S Reddy; Christopher C Moser; P Leslie Dutton
Journal:  Nature       Date:  2009-03-19       Impact factor: 49.962

Review 9.  Long-range proton-coupled electron transfer in biological energy conversion: towards mechanistic understanding of respiratory complex I.

Authors:  Ville R I Kaila
Journal:  J R Soc Interface       Date:  2018-04       Impact factor: 4.118

10.  Conformational dynamics modulate the catalytic activity of the molecular chaperone Hsp90.

Authors:  Sophie L Mader; Abraham Lopez; Jannis Lawatscheck; Qi Luo; Daniel A Rutz; Ana P Gamiz-Hernandez; Michael Sattler; Johannes Buchner; Ville R I Kaila
Journal:  Nat Commun       Date:  2020-03-16       Impact factor: 14.919

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  2 in total

1.  Resolving Chemical Dynamics in Biological Energy Conversion: Long-Range Proton-Coupled Electron Transfer in Respiratory Complex I.

Authors:  Ville R I Kaila
Journal:  Acc Chem Res       Date:  2021-12-13       Impact factor: 22.384

2.  Molecular Principles of Redox-Coupled Protonation Dynamics in Photosystem II.

Authors:  Friederike Allgöwer; Ana P Gamiz-Hernandez; A William Rutherford; Ville R I Kaila
Journal:  J Am Chem Soc       Date:  2022-04-14       Impact factor: 16.383

  2 in total

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