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Literature DB >> 33766907

Genome Sequence of the Black Yeast-Like Strain Aureobasidium pullulans var. aubasidani CBS 100524.

Gabriel A Vignolle¹, Robert L Mach¹, Astrid R Mach-Aigner¹, Christian Derntl².

Abstract

In this work, we present the whole-genome sequence and the complete mitochondrial sequence of the black yeast-like strain Aureobasidium pullulans var. aubasidani CBS 100524, which produces the exopolysaccharide aubasidan and was previously isolated from Betula sp. slime flux from the Leningrad Region of Russia.

Entities: Chemical

Year: 2021 PMID： 33766907 PMCID： PMC7996466 DOI： 10.1128/MRA.01293-20

Source DB: PubMed Journal: Microbiol Resour Announc ISSN： 2576-098X

20 in total

1. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors: Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal: J Comput Biol Date: 2012-04-16 Impact factor: 1.479

2. Scaffolding pre-assembled contigs using SSPACE.

Authors: Marten Boetzer; Christiaan V Henkel; Hans J Jansen; Derek Butler; Walter Pirovano
Journal: Bioinformatics Date: 2010-12-12 Impact factor: 6.937

3. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.

Authors: Felipe A Simão; Robert M Waterhouse; Panagiotis Ioannidis; Evgenia V Kriventseva; Evgeny M Zdobnov
Journal: Bioinformatics Date: 2015-06-09 Impact factor: 6.937

4. Predicting Genes in Single Genomes with AUGUSTUS.

Authors: Katharina J Hoff; Mario Stanke
Journal: Curr Protoc Bioinformatics Date: 2018-11-22

5. QUAST: quality assessment tool for genome assemblies.

Authors: Alexey Gurevich; Vladislav Saveliev; Nikolay Vyahhi; Glenn Tesler
Journal: Bioinformatics Date: 2013-02-19 Impact factor: 6.937

6. Fast gapped-read alignment with Bowtie 2.

Authors: Ben Langmead; Steven L Salzberg
Journal: Nat Methods Date: 2012-03-04 Impact factor: 28.547

7. A new variety of Aureobasidium pullulans characterized by exopolysaccharide structure, nutritional physiology and molecular features.

Authors: N A Yurlova; G S de Hoog
Journal: Antonie Van Leeuwenhoek Date: 1997-08 Impact factor: 2.271

Genome Sequence of the Black Yeast-Like Strain Aureobasidium pullulans var. aubasidani CBS 100524.

1. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

2. Scaffolding pre-assembled contigs using SSPACE.

3. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.

4. Predicting Genes in Single Genomes with AUGUSTUS.

5. QUAST: quality assessment tool for genome assemblies.

6. Fast gapped-read alignment with Bowtie 2.

7. A new variety of Aureobasidium pullulans characterized by exopolysaccharide structure, nutritional physiology and molecular features.

8. Versatile genome assembly evaluation with QUAST-LG.

9. Fast and accurate short read alignment with Burrows-Wheeler transform.

10. Redefinition of Aureobasidium pullulans and its varieties.

1. Recommendations To Prevent Taxonomic Misidentification of Genome-Sequenced Fungal Strains.