Literature DB >> 33766902

Genome Sequences of Three SARS-CoV-2 P.1 Strains Identified from Patients Returning from Brazil to Italy.

Emiliano Delli Compagni1, Lucija Jurisic1,2, Marialuigia Caporale1, Federico Bacà1, Silvia Scialabba1, Sara Fanì1, Alessia Perullo1, Michela Toro1, Alice Marchegiano1, Michele Martino1, Daniela Di Giacomo1, Teresa Romualdi1, Serena Verzulli1, Eugenia Ciarrocchi1, Barbara Secondini1, Marta Di Giuseppe1, Roberta Irelli1, Alessio Di Lorenzo1, Fabrizia Valleriani1, Shadia Berjaoui1, Ilaria Puglia1, Valentina Curini1, Iolanda Mangone1, Alessio Lorusso3.   

Abstract

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the causative agent of the current coronavirus disease 2019 (COVID-19) pandemic. We report the complete sequences of three SARS-CoV-2 P.1 strains obtained from nasopharyngeal swab specimens from three patients returning from Brazil to Italy.
Copyright © 2021 Delli Compagni et al.

Entities:  

Year:  2021        PMID： 33766902      PMCID： PMC7996461          DOI： 10.1128/MRA.00177-21

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  10 in total

1.  Spike mutation D614G alters SARS-CoV-2 fitness.

Authors:  Jessica A Plante; Yang Liu; Jianying Liu; Hongjie Xia; Bryan A Johnson; Kumari G Lokugamage; Xianwen Zhang; Antonio E Muruato; Jing Zou; Camila R Fontes-Garfias; Divya Mirchandani; Dionna Scharton; John P Bilello; Zhiqiang Ku; Zhiqiang An; Birte Kalveram; Alexander N Freiberg; Vineet D Menachery; Xuping Xie; Kenneth S Plante; Scott C Weaver; Pei-Yong Shi
Journal:  Nature       Date:  2020-10-26       Impact factor: 49.962

2.  An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar.

Authors:  Nathan D Grubaugh; Karthik Gangavarapu; Joshua Quick; Nathaniel L Matteson; Jaqueline Goes De Jesus; Bradley J Main; Amanda L Tan; Lauren M Paul; Doug E Brackney; Saran Grewal; Nikos Gurfield; Koen K A Van Rompay; Sharon Isern; Scott F Michael; Lark L Coffey; Nicholas J Loman; Kristian G Andersen
Journal:  Genome Biol       Date:  2019-01-08       Impact factor: 13.583

3.  A pneumonia outbreak associated with a new coronavirus of probable bat origin.

Authors:  Peng Zhou; Xing-Lou Yang; Xian-Guang Wang; Ben Hu; Lei Zhang; Wei Zhang; Hao-Rui Si; Yan Zhu; Bei Li; Chao-Lin Huang; Hui-Dong Chen; Jing Chen; Yun Luo; Hua Guo; Ren-Di Jiang; Mei-Qin Liu; Ying Chen; Xu-Rui Shen; Xi Wang; Xiao-Shuang Zheng; Kai Zhao; Quan-Jiao Chen; Fei Deng; Lin-Lin Liu; Bing Yan; Fa-Xian Zhan; Yan-Yi Wang; Geng-Fu Xiao; Zheng-Li Shi
Journal:  Nature       Date:  2020-02-03       Impact factor: 69.504

4.  A "One-Health" approach for diagnosis and molecular characterization of SARS-CoV-2 in Italy.

Authors:  Alessio Lorusso; Paolo Calistri; Maria Teresa Mercante; Federica Monaco; Ottavio Portanti; Maurilia Marcacci; Cesare Cammà; Antonio Rinaldi; Iolanda Mangone; Adriano Di Pasquale; Marino Iommarini; Maria Mattucci; Paolo Fazii; Pierluigi Tarquini; Rinalda Mariani; Alessandro Grimaldi; Daniela Morelli; Giacomo Migliorati; Giovanni Savini; Silvio Borrello; Nicola D'Alterio
Journal:  One Health       Date:  2020-04-19

5.  The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2.

Authors: 
Journal:  Nat Microbiol       Date:  2020-03-02       Impact factor: 17.745

Review 6.  Novel human coronavirus (SARS-CoV-2): A lesson from animal coronaviruses.

Authors:  Nicola Decaro; Alessio Lorusso
Journal:  Vet Microbiol       Date:  2020-04-14       Impact factor: 3.293

7.  A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology.

Authors:  Andrew Rambaut; Edward C Holmes; Áine O'Toole; Verity Hill; John T McCrone; Christopher Ruis; Louis du Plessis; Oliver G Pybus
Journal:  Nat Microbiol       Date:  2020-07-15       Impact factor: 17.745

8.  Disentangling primer interactions improves SARS-CoV-2 genome sequencing by multiplex tiling PCR.

Authors:  Kentaro Itokawa; Tsuyoshi Sekizuka; Masanori Hashino; Rina Tanaka; Makoto Kuroda
Journal:  PLoS One       Date:  2020-09-18       Impact factor: 3.240

9.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

10.  Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus.

Authors:  Bette Korber; Will M Fischer; Sandrasegaram Gnanakaran; Hyejin Yoon; James Theiler; Werner Abfalterer; Nick Hengartner; Elena E Giorgi; Tanmoy Bhattacharya; Brian Foley; Kathryn M Hastie; Matthew D Parker; David G Partridge; Cariad M Evans; Timothy M Freeman; Thushan I de Silva; Charlene McDanal; Lautaro G Perez; Haili Tang; Alex Moon-Walker; Sean P Whelan; Celia C LaBranche; Erica O Saphire; David C Montefiori
Journal:  Cell       Date:  2020-07-03       Impact factor: 66.850
  10 in total
  2 in total

1.  Emergence and Spread of SARS-CoV-2 Lineages B.1.1.7 and P.1 in Italy.

Authors:  Francesca Di Giallonardo; Ilaria Puglia; Valentina Curini; Cesare Cammà; Iolanda Mangone; Paolo Calistri; Joanna C A Cobbin; Edward C Holmes; Alessio Lorusso
Journal:  Viruses       Date:  2021-04-29       Impact factor: 5.048

2.  Temporal spread and evolution of SARS-CoV-2 in the second pandemic wave in Brazil.

Authors:  Jonas M Wolf; Diéssy Kipper; Gabriela R Borges; André F Streck; Vagner R Lunge
Journal:  J Med Virol       Date:  2021-10-08       Impact factor: 20.693
  2 in total

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