Literature DB >> 33766899

Draft Genome Sequences of the Clinical Isolates Kp 23 and KPM 20.

Alyssa K W Maclean1,2, Nancy D Hanson3,2.   

Abstract

Klebsiella pneumoniae strains are capable of becoming resistant through multiple mechanisms. Here, we announce draft sequences for Kp 23, a clinical isolate with no plasmid-encoded β-lactamases, and KPM 20, a clinical isolate with no plasmid-encoded β-lactamases and no detectable OmpK35, OmpK36, or PhoE in the outer membrane.
Copyright © 2021 Maclean and Hanson.

Entities:  

Year:  2021        PMID： 33766899      PMCID： PMC7996458          DOI： 10.1128/MRA.00119-21

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  14 in total

1.  Using SPAdes De Novo Assembler.

Authors:  Andrey Prjibelski; Dmitry Antipov; Dmitry Meleshko; Alla Lapidus; Anton Korobeynikov
Journal:  Curr Protoc Bioinformatics       Date:  2020-06

2.  Efficient de novo assembly of large genomes using compressed data structures.

Authors:  Jared T Simpson; Richard Durbin
Journal:  Genome Res       Date:  2011-12-07       Impact factor: 9.043

3.  High-level carbapenem resistance in a Klebsiella pneumoniae clinical isolate is due to the combination of bla(ACT-1) beta-lactamase production, porin OmpK35/36 insertional inactivation, and down-regulation of the phosphate transport porin phoe.

Authors:  Frank M Kaczmarek; Fadia Dib-Hajj; Wenchi Shang; Thomas D Gootz
Journal:  Antimicrob Agents Chemother       Date:  2006-10       Impact factor: 5.191

4.  In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing.

Authors:  Alessandra Carattoli; Ea Zankari; Aurora García-Fernández; Mette Voldby Larsen; Ole Lund; Laura Villa; Frank Møller Aarestrup; Henrik Hasman
Journal:  Antimicrob Agents Chemother       Date:  2014-04-28       Impact factor: 5.191

5.  Role of Klebsiella pneumoniae OmpK35 porin in antimicrobial resistance.

Authors:  Antonio Doménech-Sánchez; Luis Martínez-Martínez; Santiago Hernández-Allés; María del Carmen Conejo; Alvaro Pascual; Juan M Tomás; Sebastián Albertí; Vicente Javier Benedí
Journal:  Antimicrob Agents Chemother       Date:  2003-10       Impact factor: 5.191

6.  Draft Genome Sequence of the Mucoid Pseudomonas aeruginosa Clinical Isolate PA34.

Authors:  Lucas B Harrison; Nancy D Hanson
Journal:  Genome Announc       Date:  2017-11-16

7.  Draft Genome Assemblies of Clinical Isolates of Klebsiella pneumoniae V9011662 and Enterobacter hormaechei Entb306.

Authors:  Lucas B Harrison; Anna Selmecki; Nancy D Hanson
Journal:  Microbiol Resour Announc       Date:  2019-04-11

8.  OmpK36-mediated Carbapenem resistance attenuates ST258 Klebsiella pneumoniae in vivo.

Authors:  Joshua L C Wong; Maria Romano; Louise E Kerry; Hok-Sau Kwong; Wen-Wen Low; Stephen J Brett; Abigail Clements; Konstantinos Beis; Gad Frankel
Journal:  Nat Commun       Date:  2019-09-02       Impact factor: 14.919

9.  Ragout-a reference-assisted assembly tool for bacterial genomes.

Authors:  Mikhail Kolmogorov; Brian Raney; Benedict Paten; Son Pham
Journal:  Bioinformatics       Date:  2014-06-15       Impact factor: 6.937

10.  ResFinder 4.0 for predictions of phenotypes from genotypes.

Authors:  Valeria Bortolaia; Rolf S Kaas; Etienne Ruppe; Marilyn C Roberts; Stefan Schwarz; Vincent Cattoir; Alain Philippon; Rosa L Allesoe; Ana Rita Rebelo; Alfred Ferrer Florensa; Linda Fagelhauer; Trinad Chakraborty; Bernd Neumann; Guido Werner; Jennifer K Bender; Kerstin Stingl; Minh Nguyen; Jasmine Coppens; Basil Britto Xavier; Surbhi Malhotra-Kumar; Henrik Westh; Mette Pinholt; Muna F Anjum; Nicholas A Duggett; Isabelle Kempf; Suvi Nykäsenoja; Satu Olkkola; Kinga Wieczorek; Ana Amaro; Lurdes Clemente; Joël Mossong; Serge Losch; Catherine Ragimbeau; Ole Lund; Frank M Aarestrup
Journal:  J Antimicrob Chemother       Date:  2020-12-01       Impact factor: 5.790
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