Literature DB >> 33763204

Building a successful international research community through data sharing: The case of the Wheat Information System (WheatIS).

Taner Z Sen1, Mario Caccamo2, David Edwards3, Hadi Quesneville4,5.   

Abstract

The International Wheat Information System (WheatIS) Expert Working Group (EWG) was initiated in 2012 under the Wheat Initiative with a broad range of contributing organizations. The mission of the WheatIS EWG was to create an informational infrastructure, establish data standards, and build a single portal that allows search, retrieval, and display of globally distributed wheat data sets that are indexed in standard data formats at servers around the world. The web portal at WheatIS.org was released publicly in 2015, and by 2020, it expanded to 8 geographically-distributed nodes and around 20 organizations under its umbrella.   In this paper, we present our experience, the challenges we faced, and the answer we brought for establishing an international research community to build an informational infrastructure. Our hope is that our experience with building wheatis.org will guide current and future research communities to facilitate institutional and international challenges to create global tools and resources to help their respective scientific communities. Copyright:
© 2020 Sen TZ et al.

Entities:  

Keywords:  WheatIS; bioinformatics; community; data sharing; wheat

Year:  2020        PMID: 33763204      PMCID: PMC7953914          DOI: 10.12688/f1000research.23525.1

Source DB:  PubMed          Journal:  F1000Res        ISSN: 2046-1402


  13 in total

1.  An international bioinformatics infrastructure to underpin the Arabidopsis community.

Authors: 
Journal:  Plant Cell       Date:  2010-08-31       Impact factor: 11.277

Review 2.  Progress in single-access information systems for wheat and rice crop improvement.

Authors:  Armin Scheben; Chon-Kit Kenneth Chan; Locedie Mansueto; Ramil Mauleon; Pierre Larmande; Nickolai Alexandrov; Rod A Wing; Kenneth L McNally; Hadi Quesneville; David Edwards
Journal:  Brief Bioinform       Date:  2019-03-25       Impact factor: 11.622

3.  GrainGenes: centralized small grain resources and digital platform for geneticists and breeders.

Authors:  Victoria C Blake; Margaret R Woodhouse; Gerard R Lazo; Sarah G Odell; Charlene P Wight; Nicholas A Tinker; Yi Wang; Yong Q Gu; Clay L Birkett; Jean-Luc Jannink; Dave E Matthews; David L Hane; Steve L Michel; Eric Yao; Taner Z Sen
Journal:  Database (Oxford)       Date:  2019-01-01       Impact factor: 3.451

Review 4.  Towards an open grapevine information system.

Authors:  A-F Adam-Blondon; M Alaux; C Pommier; D Cantu; Z-M Cheng; G R Cramer; C Davies; S Delrot; L Deluc; G Di Gaspero; J Grimplet; A Fennell; J P Londo; P Kersey; F Mattivi; S Naithani; P Neveu; M Nikolski; M Pezzotti; B I Reisch; R Töpfer; M A Vivier; D Ware; H Quesneville
Journal:  Hortic Res       Date:  2016-11-23       Impact factor: 6.793

5.  Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data.

Authors:  Michael Alaux; Jane Rogers; Thomas Letellier; Raphaël Flores; Françoise Alfama; Cyril Pommier; Nacer Mohellibi; Sophie Durand; Erik Kimmel; Célia Michotey; Claire Guerche; Mikaël Loaec; Mathilde Lainé; Delphine Steinbach; Frédéric Choulet; Hélène Rimbert; Philippe Leroy; Nicolas Guilhot; Jérôme Salse; Catherine Feuillet; Etienne Paux; Kellye Eversole; Anne-Françoise Adam-Blondon; Hadi Quesneville
Journal:  Genome Biol       Date:  2018-08-17       Impact factor: 13.583

6.  Arabidopsis bioinformatics resources: The current state, challenges, and priorities for the future.

Authors: 
Journal:  Plant Direct       Date:  2019-01-04

Review 7.  Genome plasticity a key factor in the success of polyploid wheat under domestication.

Authors:  Jorge Dubcovsky; Jan Dvorak
Journal:  Science       Date:  2007-06-29       Impact factor: 47.728

8.  The FAIR Guiding Principles for scientific data management and stewardship.

Authors:  Mark D Wilkinson; Michel Dumontier; I Jsbrand Jan Aalbersberg; Gabrielle Appleton; Myles Axton; Arie Baak; Niklas Blomberg; Jan-Willem Boiten; Luiz Bonino da Silva Santos; Philip E Bourne; Jildau Bouwman; Anthony J Brookes; Tim Clark; Mercè Crosas; Ingrid Dillo; Olivier Dumon; Scott Edmunds; Chris T Evelo; Richard Finkers; Alejandra Gonzalez-Beltran; Alasdair J G Gray; Paul Groth; Carole Goble; Jeffrey S Grethe; Jaap Heringa; Peter A C 't Hoen; Rob Hooft; Tobias Kuhn; Ruben Kok; Joost Kok; Scott J Lusher; Maryann E Martone; Albert Mons; Abel L Packer; Bengt Persson; Philippe Rocca-Serra; Marco Roos; Rene van Schaik; Susanna-Assunta Sansone; Erik Schultes; Thierry Sengstag; Ted Slater; George Strawn; Morris A Swertz; Mark Thompson; Johan van der Lei; Erik van Mulligen; Jan Velterop; Andra Waagmeester; Peter Wittenburg; Katherine Wolstencroft; Jun Zhao; Barend Mons
Journal:  Sci Data       Date:  2016-03-15       Impact factor: 6.444

9.  CerealsDB 3.0: expansion of resources and data integration.

Authors:  Paul A Wilkinson; Mark O Winfield; Gary L A Barker; Simon Tyrrell; Xingdong Bian; Alexandra M Allen; Amanda Burridge; Jane A Coghill; Christy Waterfall; Mario Caccamo; Robert P Davey; Keith J Edwards
Journal:  BMC Bioinformatics       Date:  2016-06-24       Impact factor: 3.169

10.  Developing data interoperability using standards: A wheat community use case.

Authors:  Esther Dzale Yeumo; Michael Alaux; Elizabeth Arnaud; Sophie Aubin; Ute Baumann; Patrice Buche; Laurel Cooper; Hanna Ćwiek-Kupczyńska; Robert P Davey; Richard Allan Fulss; Clement Jonquet; Marie-Angélique Laporte; Pierre Larmande; Cyril Pommier; Vassilis Protonotarios; Carmen Reverte; Rosemary Shrestha; Imma Subirats; Aravind Venkatesan; Alex Whan; Hadi Quesneville
Journal:  F1000Res       Date:  2017-10-16
View more
  2 in total

1.  GrainGenes: a data-rich repository for small grains genetics and genomics.

Authors:  Eric Yao; Victoria C Blake; Laurel Cooper; Charlene P Wight; Steve Michel; H Busra Cagirici; Gerard R Lazo; Clay L Birkett; David J Waring; Jean-Luc Jannink; Ian Holmes; Amanda J Waters; David P Eickholt; Taner Z Sen
Journal:  Database (Oxford)       Date:  2022-05-25       Impact factor: 4.462

2.  GrainGenes: Tools and Content to Assist Breeders Improving Oat Quality.

Authors:  Victoria C Blake; Charlene P Wight; Eric Yao; Taner Z Sen
Journal:  Foods       Date:  2022-03-23
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.