Literature DB >> 33761998

How to design a national genomic project-a systematic review of active projects.

Anja Kovanda1, Ana Nyasha Zimani1, Borut Peterlin2.   

Abstract

An increasing number of countries are investing efforts to exploit the human genome, in order to improve genetic diagnostics and to pave the way for the integration of precision medicine into health systems. The expected benefits include improved understanding of normal and pathological genomic variation, shorter time-to-diagnosis, cost-effective diagnostics, targeted prevention and treatment, and research advances.We review the 41 currently active individual national projects concerning their aims and scope, the number and age structure of included subjects, funding, data sharing goals and methods, and linkage with biobanks, medical data, and non-medical data (exposome). The main aims of ongoing projects were to determine normal genomic variation (90%), determine pathological genomic variation (rare disease, complex diseases, cancer, etc.) (71%), improve infrastructure (59%), and enable personalized medicine (37%). Numbers of subjects to be sequenced ranges substantially, from a hundred to over a million, representing in some cases a significant portion of the population. Approximately half of the projects report public funding, with the rest having various mixed or private funding arrangements. 90% of projects report data sharing (public, academic, and/or commercial with various levels of access) and plan on linking genomic data and medical data (78%), existing biobanks (44%), and/or non-medical data (24%) as the basis for enabling personal/precision medicine in the future.Our results show substantial diversity in the analysed categories of 41 ongoing national projects. The overview of current designs will hopefully inform national initiatives in designing new genomic projects and contribute to standardisation and international collaboration.

Entities:  

Keywords:  Exposome; National genomic projects; Normal genomic variation; Pathological genomic variation; Personalized medicine; Population genomics; Precision medicine

Mesh:

Year:  2021        PMID: 33761998      PMCID: PMC7988644          DOI: 10.1186/s40246-021-00315-6

Source DB:  PubMed          Journal:  Hum Genomics        ISSN: 1473-9542            Impact factor:   4.639


  37 in total

Review 1.  Integration of the human exposome with the human genome to advance medicine.

Authors:  Robert Barouki; Karine Audouze; Xavier Coumoul; Florence Demenais; Dominique Gauguier
Journal:  Biochimie       Date:  2018-06-28       Impact factor: 4.079

Review 2.  Informatics and Data Analytics to Support Exposome-Based Discovery for Public Health.

Authors:  Arjun K Manrai; Yuxia Cui; Pierre R Bushel; Molly Hall; Spyros Karakitsios; Carolyn J Mattingly; Marylyn Ritchie; Charles Schmitt; Denis A Sarigiannis; Duncan C Thomas; David Wishart; David M Balshaw; Chirag J Patel
Journal:  Annu Rev Public Health       Date:  2016-12-23       Impact factor: 21.981

Review 3.  Human Disease Variation in the Light of Population Genomics.

Authors:  Ana Prohaska; Fernando Racimo; Andrew J Schork; Martin Sikora; Aaron J Stern; Melissa Ilardo; Morten Erik Allentoft; Lasse Folkersen; Alfonso Buil; J Víctor Moreno-Mayar; Thorfinn Korneliussen; Daniel Geschwind; Andrés Ingason; Thomas Werge; Rasmus Nielsen; Eske Willerslev
Journal:  Cell       Date:  2019-03-21       Impact factor: 41.582

Review 4.  Genomics-Guided Immunotherapy for Precision Medicine in Cancer.

Authors:  Shradha Mukherjee
Journal:  Cancer Biother Radiopharm       Date:  2019-07-16       Impact factor: 3.099

Review 5.  Personalized Medicine: What's in it for Rare Diseases?

Authors:  Sebastian Schee Genannt Halfmann; Laura Mählmann; Lada Leyens; Matthias Reumann; Angela Brand
Journal:  Adv Exp Med Biol       Date:  2017       Impact factor: 2.622

6.  Cohort Profile: Estonian Biobank of the Estonian Genome Center, University of Tartu.

Authors:  Liis Leitsalu; Toomas Haller; Tõnu Esko; Mari-Liis Tammesoo; Helene Alavere; Harold Snieder; Markus Perola; Pauline C Ng; Reedik Mägi; Lili Milani; Krista Fischer; Andres Metspalu
Journal:  Int J Epidemiol       Date:  2014-02-11       Impact factor: 7.196

7.  Genetics and genomic medicine in Indonesia.

Authors:  Yulia Ariani; Purnomo Soeharso; Damayanti R Sjarif
Journal:  Mol Genet Genomic Med       Date:  2017-03-29       Impact factor: 2.183

8.  Ten years of Genome Medicine.

Authors:  Charles Auffray; Julian L Griffin; Muin J Khoury; James R Lupski; Matthias Schwab
Journal:  Genome Med       Date:  2019-02-15       Impact factor: 11.117

9.  Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach.

Authors:  Dinesh Kumar Barupal; Oliver Fiehn
Journal:  Environ Health Perspect       Date:  2019-09-26       Impact factor: 9.031

10.  Population History and Gene Divergence in Native Mexicans Inferred from 76 Human Exomes.

Authors:  María C Ávila-Arcos; Kimberly F McManus; Karla Sandoval; Juan Esteban Rodríguez-Rodríguez; Viridiana Villa-Islas; Alicia R Martin; Pierre Luisi; Rosenda I Peñaloza-Espinosa; Celeste Eng; Scott Huntsman; Esteban G Burchard; Christopher R Gignoux; Carlos D Bustamante; Andrés Moreno-Estrada
Journal:  Mol Biol Evol       Date:  2020-04-01       Impact factor: 16.240

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  2 in total

Review 1.  Genomics in Egypt: Current Status and Future Aspects.

Authors:  Eman Ahmed El-Attar; Rasha Mohamed Helmy Elkaffas; Sarah Ahmed Aglan; Iman S Naga; Amira Nabil; Hoda Y Abdallah
Journal:  Front Genet       Date:  2022-05-13       Impact factor: 4.772

2.  Pursuing Public Health Benefit Within National Genomic Initiatives: Learning From Different Policies.

Authors:  Suzanne M Onstwedder; Marleen E Jansen; Teresa Leonardo Alves; Martina C Cornel; Tessel Rigter
Journal:  Front Genet       Date:  2022-05-24       Impact factor: 4.772

  2 in total

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