Literature DB >> 33761033

Iodidimonas gelatinilytica sp. nov., aerobic iodide-oxidizing bacteria isolated from brine water and surface seawater.

Takao Iino1, Kenshiro Oshima2,3, Masahira Hattori2,4, Moriya Ohkuma5, Seigo Amachi6.   

Abstract

Chemo-organotrophic iodide (I-)-oxidizing bacterial strains Hi-2T and Mie-1 were isolated from iodide-rich natural gas brine water in Chiba and surface seawater in Mie, Japan, respectively. Cells of strains Hi-2T and Mie-1 were aerobic, Gram-negative and rod-shaped (0.3-0.5 µm width and 1.2-4.4 µm in length). Two isolates grew optimally at 30 °C, pH 7.5 and with 3% NaCl (w/v). Iodide oxidation to form molecular iodine (I2) was a biochemically unique trait for strains Hi-2T and Mie-1. The major cellular fatty acids are C18:1ω7c, C16:1ω5c and C18:1 2-OH. A phylogenetic analysis based on the 16S rRNA gene sequence revealed that strains Hi-2T and Mie-1 were located near Iodidimonas muriae C-3T with 99.2% sequence similarity. The calculated digital DNA-DNA hybridization (dDDH) value of 65.7-65.9% between the two isolates and I. muriae C-3T was lower than the threshold of 70%, which was used for prokaryotic species delineation. Strains Hi-2T and Mie-1 differed in the hydrolysis of aesculin, the hydrolysis of gelatin and the major cellular fatty acids composition from I. muriae C-3T. Considering these biochemical properties, the major cellular fatty acids composition and dDDH value, a novel species is proposed for strains Hi-2T (= JCM 17844T = LMG 28661T) and Mie-1 (= JCM 17845 = LMG 28662), to be named Iodidimonas gelatinilytica.

Entities:  

Keywords:  Iodide-oxidizing bacteria; Iodidimonas gelatinilytica; Natural gas brine water; Surface seawater

Year:  2021        PMID: 33761033     DOI: 10.1007/s10482-021-01546-2

Source DB:  PubMed          Journal:  Antonie Van Leeuwenhoek        ISSN: 0003-6072            Impact factor:   2.271


  14 in total

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Journal:  Nucleic Acids Res       Date:  2004-02-25       Impact factor: 16.971

2.  DNA-DNA hybridization values and their relationship to whole-genome sequence similarities.

Authors:  Johan Goris; Konstantinos T Konstantinidis; Joel A Klappenbach; Tom Coenye; Peter Vandamme; James M Tiedje
Journal:  Int J Syst Evol Microbiol       Date:  2007-01       Impact factor: 2.747

3.  Isolation of iodide-oxidizing bacteria from iodide-rich natural gas brines and seawaters.

Authors:  Seigo Amachi; Yasuyuki Muramatsu; Yukako Akiyama; Kazumi Miyazaki; Sayaka Yoshiki; Satoshi Hanada; Yoichi Kamagata; Tadaaki Ban-nai; Hirofumi Shinoyama; Takaaki Fujii
Journal:  Microb Ecol       Date:  2005-07-27       Impact factor: 4.552

4.  Isolation of iodine-producing bacteria from aquaria.

Authors:  R S Gozlan
Journal:  Antonie Van Leeuwenhoek       Date:  1968       Impact factor: 2.271

5.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

6.  Iodidimonas muriae gen. nov., sp. nov., an aerobic iodide-oxidizing bacterium isolated from brine of a natural gas and iodine recovery facility, and proposals of Iodidimonadaceae fam. nov., Iodidimonadales ord. nov., Emcibacteraceae fam. nov. and Emcibacterales ord. nov.

Authors:  Takao Iino; Moriya Ohkuma; Yoichi Kamagata; Seigo Amachi
Journal:  Int J Syst Evol Microbiol       Date:  2016-08-26       Impact factor: 2.747

7.  Esculin hydrolysis by Enterobacteriaceae.

Authors:  S C Edberg; S Pittman; J M Singer
Journal:  J Clin Microbiol       Date:  1977-08       Impact factor: 5.948

8.  Complete genome sequence of DSM 30083(T), the type strain (U5/41(T)) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy.

Authors:  Jan P Meier-Kolthoff; Richard L Hahnke; Jörn Petersen; Carmen Scheuner; Victoria Michael; Anne Fiebig; Christine Rohde; Manfred Rohde; Berthold Fartmann; Lynne A Goodwin; Olga Chertkov; Tbk Reddy; Amrita Pati; Natalia N Ivanova; Victor Markowitz; Nikos C Kyrpides; Tanja Woyke; Markus Göker; Hans-Peter Klenk
Journal:  Stand Genomic Sci       Date:  2014-12-08

9.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

10.  Draft genome sequence of strain q-1, an iodide-oxidizing alphaproteobacterium isolated from natural gas brine water.

Authors:  Ayaka Ehara; Haruo Suzuki; Yu Kanesaki; Hirofumi Yoshikawa; Seigo Amachi
Journal:  Genome Announc       Date:  2014-07-03
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  1 in total

Review 1.  The Genus Iodidimonas: From Its Discovery to Potential Applications.

Authors:  Seigo Amachi; Takao Iino
Journal:  Microorganisms       Date:  2022-08-17
  1 in total

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