Literature DB >> 33753794

Machine learning estimation of tissue optical properties.

Brett H Hokr1, Joel N Bixler2.   

Abstract

Dynamic, in vivo measurement of the optical properties of biological tissues is still an elusive and critically important problem. Here we develop a technique for inverting a Monte Carlo simulation to extract tissue optical properties from the statistical moments of the spatio-temporal response of the tissue by training a 5-layer fully connected neural network. We demonstrate the accuracy of the method across a very wide parameter space on a single homogeneous layer tissue model and demonstrate that the method is insensitive to parameter selection of the neural network model itself. Finally, we propose an experimental setup capable of measuring the required information in real time in an in vivo environment and demonstrate proof-of-concept level experimental results.

Entities:  

Year:  2021        PMID: 33753794      PMCID: PMC7985205          DOI: 10.1038/s41598-021-85994-w

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.996


  21 in total

1.  Monte Carlo-based inverse model for calculating tissue optical properties. Part I: Theory and validation on synthetic phantoms.

Authors:  Gregory M Palmer; Nirmala Ramanujam
Journal:  Appl Opt       Date:  2006-02-10       Impact factor: 1.980

2.  Modeling focusing Gaussian beams in a turbid medium with Monte Carlo simulations.

Authors:  Brett H Hokr; Joel N Bixler; Gabriel Elpers; Byron Zollars; Robert J Thomas; Vladislav V Yakovlev; Marlan O Scully
Journal:  Opt Express       Date:  2015-04-06       Impact factor: 3.894

3.  Single-shot chemical detection and identification with compressed hyperspectral Raman imaging.

Authors:  Jonathan V Thompson; Joel N Bixler; Brett H Hokr; Gary D Noojin; Marlan O Scully; Vladislav V Yakovlev
Journal:  Opt Lett       Date:  2017-06-01       Impact factor: 3.776

4.  Assessment of tissue heating under tunable near-infrared radiation.

Authors:  Joel N Bixler; Brett H Hokr; Michael L Denton; Gary D Noojin; Aurora D Shingledecker; Hope T Beier; Robert J Thomas; Benjamin A Rockwell; Vladislav V Yakovlev
Journal:  J Biomed Opt       Date:  2014       Impact factor: 3.170

5.  MCML--Monte Carlo modeling of light transport in multi-layered tissues.

Authors:  L Wang; S L Jacques; L Zheng
Journal:  Comput Methods Programs Biomed       Date:  1995-07       Impact factor: 5.428

6.  Rapid and accurate determination of tissue optical properties using least-squares support vector machines.

Authors:  Ishan Barman; Narahara Chari Dingari; Narasimhan Rajaram; James W Tunnell; Ramachandra R Dasari; Michael S Feld
Journal:  Biomed Opt Express       Date:  2011-02-15       Impact factor: 3.732

7.  Mesh-based Monte Carlo method using fast ray-tracing in Plücker coordinates.

Authors:  Qianqian Fang
Journal:  Biomed Opt Express       Date:  2010-07-15       Impact factor: 3.732

8.  Single-shot compressed ultrafast photography at one hundred billion frames per second.

Authors:  Liang Gao; Jinyang Liang; Chiye Li; Lihong V Wang
Journal:  Nature       Date:  2014-12-04       Impact factor: 49.962

9.  Through-skull fluorescence imaging of the brain in a new near-infrared window.

Authors:  Guosong Hong; Shuo Diao; Junlei Chang; Alexander L Antaris; Changxin Chen; Bo Zhang; Su Zhao; Dmitriy N Atochin; Paul L Huang; Katrin I Andreasson; Calvin J Kuo; Hongjie Dai
Journal:  Nat Photonics       Date:  2014-08-03       Impact factor: 38.771

10.  Single-shot real-time femtosecond imaging of temporal focusing.

Authors:  Jinyang Liang; Liren Zhu; Lihong V Wang
Journal:  Light Sci Appl       Date:  2018-08-08       Impact factor: 17.782

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  2 in total

1.  Phase function estimation from a diffuse optical image via deep learning.

Authors:  Yuxuan Liang; Chuang Niu; Chen Wei; Shenghan Ren; Wenxiang Cong; Ge Wang
Journal:  Phys Med Biol       Date:  2022-03-25       Impact factor: 4.174

2.  MCDataset: a public reference dataset of Monte Carlo simulated quantities for multilayered and voxelated tissues computed by massively parallel PyXOpto Python package.

Authors:  Miran Bürmen; Franjo Pernuš; Peter Naglič
Journal:  J Biomed Opt       Date:  2022-04       Impact factor: 3.758

  2 in total

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