Literature DB >> 33751337

Molecular characterization for food safety assessment of a genetically modified late blight resistant potato: an unusual case.

Kelly A Zarka1, Karen Hokanson2, David S Douches3.   

Abstract

Standard food safety assessments of genetically modified crops require a thorough molecular characterization of the novel DNA as inserted into the plant that is intended for commercialization, as well as a comparison of agronomic and nutritional characteristics of the genetically modified to the non-modified counterpart. These characterization data are used to identify any unintended changes in the inserted DNA or in the modified plant that would require assessment for safety in addition to the assessment of the intended modification. An unusual case of an unintended effect discovered from the molecular characterization of a genetically modified late blight resistant potato developed for growing in Bangladesh and Indonesia is presented here. Not only was a significant portion of the plasmid vector backbone DNA inserted into the plant along with the intended insertion of an R-gene for late blight resistance, but the inserted DNA was split into two separate fragments and inserted into two separate chromosomes. One fragment carries the R-gene and the other fragment carries the NPTII selectable marker gene and the plasmid backbone DNA. The implications of this for the food safety assessment of this late blight resistant potato are considered.

Entities:  

Keywords:  Deregulation; Phytophthora infestans; Plasmid backbone; RB gene; Solanum tuberosum; T-DNA; Transformation

Mesh:

Substances:

Year:  2021        PMID: 33751337     DOI: 10.1007/s11248-021-00241-2

Source DB:  PubMed          Journal:  Transgenic Res        ISSN: 0962-8819            Impact factor:   2.788


  9 in total

Review 1.  Assessment of the food safety issues related to genetically modified foods.

Authors:  H A Kuiper; G A Kleter; H P Noteborn; E J Kok
Journal:  Plant J       Date:  2001-09       Impact factor: 6.417

2.  A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data.

Authors:  Heng Li
Journal:  Bioinformatics       Date:  2011-09-08       Impact factor: 6.937

3.  Unintended compositional changes in genetically modified (GM) crops: 20 years of research.

Authors:  Rod A Herman; William D Price
Journal:  J Agric Food Chem       Date:  2013-02-25       Impact factor: 5.279

4.  Generation of backbone-free, low transgene copy plants by launching T-DNA from the Agrobacterium chromosome.

Authors:  Heiko Oltmanns; Bronwyn Frame; Lan-Ying Lee; Susan Johnson; Bo Li; Kan Wang; Stanton B Gelvin
Journal:  Plant Physiol       Date:  2009-12-18       Impact factor: 8.340

5.  The Sequence Alignment/Map format and SAMtools.

Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

6.  Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated Solanum tuberosum.

Authors:  Michael A Hardigan; Emily Crisovan; John P Hamilton; Jeongwoon Kim; Parker Laimbeer; Courtney P Leisner; Norma C Manrique-Carpintero; Linsey Newton; Gina M Pham; Brieanne Vaillancourt; Xueming Yang; Zixian Zeng; David S Douches; Jiming Jiang; Richard E Veilleux; C Robin Buell
Journal:  Plant Cell       Date:  2016-01-15       Impact factor: 11.277

7.  A bioinformatics approach for identifying transgene insertion sites using whole genome sequencing data.

Authors:  Doori Park; Su-Hyun Park; Yong Wook Ban; Youn Shic Kim; Kyoung-Cheul Park; Nam-Soo Kim; Ju-Kon Kim; Ik-Young Choi
Journal:  BMC Biotechnol       Date:  2017-08-15       Impact factor: 2.563

8.  Conducting fit-for-purpose food safety risk assessments.

Authors:  Yann Devos; Kevin C Elliott; Philip Macdonald; Katherine McComas; Lucia Parrino; Domagoj Vrbos; Tobin Robinson; David Spiegelhalter; Barbara Gallani
Journal:  EFSA J       Date:  2019-07-08

9.  FastQ Screen: A tool for multi-genome mapping and quality control.

Authors:  Steven W Wingett; Simon Andrews
Journal:  F1000Res       Date:  2018-08-24
  9 in total

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